Stochastic Gene Expression and the Processing and Propagation of Noisy Signals in Genetic Networks

Author(s):  
Daniel A. Charlebois ◽  
Theodore J. Perkins ◽  
Mads Kaern
BMC Biology ◽  
2013 ◽  
Vol 11 (1) ◽  
pp. 15 ◽  
Author(s):  
José Viñuelas ◽  
Gaël Kaneko ◽  
Antoine Coulon ◽  
Elodie Vallin ◽  
Valérie Morin ◽  
...  

2003 ◽  
Vol 31 (6) ◽  
pp. 1516-1518 ◽  
Author(s):  
D. Husmeier

This paper provides a brief introduction to learning Bayesian networks from gene-expression data. The method is contrasted with other approaches to the reverse engineering of biochemical networks, and the Bayesian learning paradigm is briefly described. The article demonstrates an application to a simple synthetic toy problem and evaluates the inference performance in terms of ROC (receiver operator characteristic) curves.


2020 ◽  
Vol 7 (7) ◽  
pp. 191243
Author(s):  
Ayoub Lasri ◽  
Viktorija Juric ◽  
Maité Verreault ◽  
Franck Bielle ◽  
Ahmed Idbaih ◽  
...  

Glioblastoma (GBM) is the most aggressive malignant primary brain tumour with a median overall survival of 15 months. To treat GBM, patients currently undergo a surgical resection followed by exposure to radiotherapy and concurrent and adjuvant temozolomide (TMZ) chemotherapy. However, this protocol often leads to treatment failure, with drug resistance being the main reason behind this. To date, many studies highlight the role of O-6-methylguanine-DNA methyltransferase (MGMT) in conferring drug resistance. The mechanism through which MGMT confers resistance is not well studied—particularly in terms of computational models. With only a few reasonable biological assumptions, we were able to show that even a minimal model of MGMT expression could robustly explain TMZ-mediated drug resistance. In particular, we showed that for a wide range of parameter values constrained by novel cell growth and viability assays, a model accounting for only stochastic gene expression of MGMT coupled with cell growth, division, partitioning and death was able to exhibit phenotypic selection of GBM cells expressing MGMT in response to TMZ. Furthermore, we found this selection allowed the cells to pass their acquired phenotypic resistance onto daughter cells in a stable manner (as long as TMZ is provided). This suggests that stochastic gene expression alone is enough to explain the development of chemotherapeutic resistance.


2004 ◽  
Vol 1 (4) ◽  
pp. 197-204 ◽  
Author(s):  
Rajesh Karmakar ◽  
Indrani Bose

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