An Incremental Linear Programming Based Tool for Analyzing Gene Expression Data

2013 ◽  
pp. 48-64
Author(s):  
Satish Ch. Panigrahi ◽  
Md. Shafiul Alam ◽  
Asish Mukhopadhyay
Keyword(s):  
Gene Expression ◽  
Linear Programming ◽  
Gene Expression Data ◽  
Expression Data

scholarly journals Identification of drug-specific pathways based on gene expression data: application to drug induced lung injury

2015 ◽  
Vol 7 (8) ◽  
pp. 904-920 ◽  
Author(s):  
Ioannis N. Melas ◽  
Theodore Sakellaropoulos ◽  
Francesco Iorio ◽  
Leonidas G. Alexopoulos ◽  
Wei-Yin Loh ◽  
...  
Keyword(s):  
Gene Expression ◽  
Linear Programming ◽  
Lung Injury ◽  
Prior Knowledge ◽  
Gene Expression Data ◽  
Integer Linear Programming ◽  
Expression Data ◽  
Drug Induced ◽  
Data Application ◽  
Toxic Drugs

An Integer Linear Programming (ILP) formulation is introduced to model the modes of action of lung toxic drugs based on gene expression data and prior knowledge of protein connectivity.

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