Genetic Dissection of Phenotypic Traits in Maritime Pine Using Rapd and Protein Markers

Author(s):  
C. Plomion ◽  
N. Bahrman ◽  
C.-E. Durel ◽  
D. M. O’Malley ◽  
A. Kremer
2000 ◽  
Vol 100 (1) ◽  
pp. 39-48 ◽  
Author(s):  
P. Costa ◽  
D. Pot ◽  
C. Dubos ◽  
J. M. Frigerio ◽  
C. Pionneau ◽  
...  

Heredity ◽  
1995 ◽  
Vol 74 (6) ◽  
pp. 661-668 ◽  
Author(s):  
C Plomion ◽  
N Bahrman ◽  
C-E Durel ◽  
D M O'Malley

2000 ◽  
Vol 30 (1) ◽  
pp. 10-16 ◽  
Author(s):  
Abdelkader Harfouche ◽  
Nasser Bahrman ◽  
Philippe Baradat ◽  
Jean Paul Guyon ◽  
Rémy Jacques Petit ◽  
...  

Maritime pine (Pinus pinaster Ait.) is a species characterized by a discontinuous natural range with populations as a rule of small size and growing in heterogeneous environments. Ten provenances belonging to the three biosystematic groups of the species (Atlantic, Mediterranean, and North African) were crossed using a diallel scheme. Parental provenances and their hybrids were tested and measured for height growth at age 1, 2, 3, 8 and 13, as well as for insect resistance and stem crookedness in a trial in southwestern France. The results show a decrease in the variance of heterosis for height growth with age. Heterosis measured as the relative superiority of the hybrid to the midparent varies from -10% to 42% at age 1 and between 2 and 20% at age 13. There is no age effect on the mean value of heterosis, which amounts to 9.7% at age 1 and 8.4% at age 13. The value of heterosis was then compared with the genetic distance of parental provenances measured with various traits and markers (phenotypic traits, terpenes, isozymes, denaturated proteins). There was a weak but significant positive correlation between genetic divergence based on markers and heterosis for height at all ages. These relations were confirmed when the level of heterosis was compared for hybrids clustered according to the subdivision of the species in three major groups. The results are in agreement with theoretical analysis of heterosis and suggest that there is a disequilibrium between loci controlling height growth and neutral loci at the between population level. No significant relationship between levels of heterosis and stem crookedness or insect resistance was detected.


2008 ◽  
Vol 32 (3) ◽  
pp. 335-342 ◽  
Author(s):  
Birger Voigt ◽  
Takashi Kuramoto ◽  
Tomoji Mashimo ◽  
Toshiko Tsurumi ◽  
Yoshiyuki Sasaki ◽  
...  

Recombinant inbred (RI) strains are formed from an outcross between two well-characterized inbred stains followed by at least 20 generations of inbreeding. RI strains can be utilized for the analysis of many complex phenotypic traits. The LEXF/FXLE RI strain set consists of 34 RI strains derived by reciprocal crossing of LE/Stm and F344/Stm. Here we report on genetic dissections of complex traits using this RI set and their parental strains. We have developed strain distribution patterns for 232 informative simple sequence length polymorphism markers. The framework map covers the rat genome except for chromosome Y. Seventy-six phenotype parameters, which included physiological and behavioral traits, were examined for these RI lines. Quantitative trait locus (QTL) analysis of these parameters revealed 27 significant and 91 suggestive QTLs, illustrating the potential of this RI resource for the detection of underlying gene functions for various phenotypes. Although this RI set was originally developed to study susceptibility to chemical-induced tumors, it has been shown to be equally powerful for a wide spectrum of traits. The LEXF/FXLE RI strains have been deposited at the National Bio Resource Project for the Rat in Japan and are maintained under specific pathogen-free conditions. They are available at http://www.anim.med.kyoto-u.ac.jp/nbr .


2021 ◽  
Vol 17 (9) ◽  
pp. e1009373
Author(s):  
Hidenori Tanaka ◽  
Jason F. Kreisberg ◽  
Trey Ideker

Despite the growing constellation of genetic loci linked to common traits, these loci have yet to account for most heritable variation, and most act through poorly understood mechanisms. Recent machine learning (ML) systems have used hierarchical biological knowledge to associate genetic mutations with phenotypic outcomes, yielding substantial predictive power and mechanistic insight. Here, we use an ontology-guided ML system to map single nucleotide variants (SNVs) focusing on 6 classic phenotypic traits in natural yeast populations. The 29 identified loci are largely novel and account for ~17% of the phenotypic variance, versus <3% for standard genetic analysis. Representative results show that sensitivity to hydroxyurea is linked to SNVs in two alternative purine biosynthesis pathways, and that sensitivity to copper arises through failure to detoxify reactive oxygen species in fatty acid metabolism. This work demonstrates a knowledge-based approach to amplifying and interpreting signals in population genetic studies.


2005 ◽  
Vol 11 ◽  
pp. 16
Author(s):  
Sandeep Kumar Mathur ◽  
Piyush Chandra ◽  
Sandhya Mishra ◽  
Piyush Ajmera ◽  
Praveen Sharma

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