scholarly journals Crossovers within a short DNA sequence indicate a long evolutionary history of the APRT*J mutation

1990 ◽  
Vol 85 (6) ◽  
Author(s):  
Naoyuki Kamatani ◽  
Shoko Kuroshima ◽  
Masayuki Hakoda ◽  
ThomasD. Palella ◽  
Yuji Hidaka
Data in Brief ◽  
2018 ◽  
Vol 18 ◽  
pp. 1972-1975 ◽  
Author(s):  
Shaoyuan Wu ◽  
Scott Edwards ◽  
Liang Liu

Parasitology ◽  
2012 ◽  
Vol 140 (10) ◽  
pp. 1201-1210 ◽  
Author(s):  
QUINN S. McFREDERICK ◽  
TAMARA S. HASELKORN ◽  
GUILHERME G. VEROCAI ◽  
JOHN JAENIKE

SUMMARYParasites in the genusOnchocercainfect humans, ruminants, camels, horses, suids, and canids, with effects ranging from relatively benign to debilitating. In North America,Onchocerca cervipedisis the sole species known to infect cervids, while at least 5Onchocercaspecies infect Eurasian cervids. In this study, we report the discovery of a cervid-parasitizingOnchocercaonly distantly related toO. cervipedis. To reconstruct the phylogenetic history of the genusOnchocerca, we used newly acquired DNA sequence fromO. cervipedis(from moose in Northwest Territories, Canada) and from the newly discovered species (from white-tailed deer in upstate New York), as well as previously published sequences. Ancestral host reconstructions suggest that host switches have been common throughout the evolutionary history ofOnchocerca, and that bovid- and cervid-parasitizing species have been particularly important sources of descendant species. North America cervids might therefore serve as a source forOnchocercainvasions into new hosts. Given the high density of deer populations, the potential for zoonotic infections may also exist. Our discovery of a newOnchocercaspecies with relatively limited sampling suggests that the diversity ofOnchocercaassociated with cervids in North America may be greater than previously thought, and surveys utilizing molecules and morphology are necessary.


PLoS ONE ◽  
2011 ◽  
Vol 6 (2) ◽  
pp. e16751 ◽  
Author(s):  
Adam C. Silver ◽  
David Williams ◽  
Joshua Faucher ◽  
Amy J. Horneman ◽  
J. Peter Gogarten ◽  
...  

2006 ◽  
Vol 2 (3) ◽  
pp. 451-454 ◽  
Author(s):  
Nikos Poulakakis ◽  
Aris Parmakelis ◽  
Petros Lymberakis ◽  
Moysis Mylonas ◽  
Eleftherios Zouros ◽  
...  

During the Pleistocene pygmy elephantids, some only a quarter of their ancestors' size, were present on Mediterranean islands until about 10 000 years ago (y.a.). Using a new methodology for ancient DNA (aDNA) studies, the whole genomic multiple displacement amplification method, we were able to retrieve cytochrome b (cyt b ) DNA fragments from 4200 to 800 000 y.a. specimens from island and mainland samples, including pygmy and normal-sized forms. The short DNA sequence (43 bp) retrieved from the 800 000 y.a. sample is one of the oldest DNA fragment ever retrieved. Duplication of the experiments in two laboratories, the occurrence of three diagnostic sites and the results of the phylogenetic analyses strongly support its authenticity. Our results challenge the prevailing view that pygmy elephantids of the eastern Mediterranean originated exclusively from Elephas , suggesting independent histories of dwarfism and the presence of both pygmy mammoths and elephant-like taxa on these islands. Based on our molecular data, the origin of the Tilos and Cyprus elephantids from a lineage within the genus Elephas is confirmed, while the DNA sequence from the Cretan sample falls clearly within the mammoth clade. Thus, the name Mammuthus creticus rather than Elephas creticus , seems to be justified for this form. Our findings also suggest a need to re-evaluate the evolutionary history of the Sicilian/Maltese species, traditionally included in the genus Elephas .


Marine Drugs ◽  
2020 ◽  
Vol 18 (2) ◽  
pp. 78 ◽  
Author(s):  
Rémy Marcellin-Gros ◽  
Gwenaël Piganeau ◽  
Didier Stien

The democratization of sequencing technologies fostered a leap in our knowledge of the diversity of marine phytoplanktonic microalgae, revealing many previously unknown species and lineages. The evolutionary history of the diversification of microalgae can be inferred from the analysis of their genome sequences. However, the link between the DNA sequence and the associated phenotype is notoriously difficult to assess, all the more so for marine phytoplanktonic microalgae for which the lab culture and, thus, biological experimentation is very tedious. Here, we explore the potential of a high-throughput untargeted metabolomic approach to explore the phenotypic–genotypic gap in 12 marine microalgae encompassing 1.2 billion years of evolution. We identified species- and lineage-specific metabolites. We also provide evidence of a very good correlation between the molecular divergence, inferred from the DNA sequences, and the metabolomic divergence, inferred from the complete metabolomic profiles. These results provide novel insights into the potential of chemotaxonomy in marine phytoplankton and support the hypothesis of a metabolomic clock, suggesting that DNA and metabolomic profiles co-evolve.


2017 ◽  
Vol 114 (37) ◽  
pp. 9859-9863 ◽  
Author(s):  
Alan R. Rogers ◽  
Ryan J. Bohlender ◽  
Chad D. Huff

Extensive DNA sequence data have made it possible to reconstruct human evolutionary history in unprecedented detail. We introduce a method to study the past several hundred thousand years. Our results show that (i) the Neanderthal–Denisovan lineage declined to a small size just after separating from the modern lineage, (ii) Neanderthals and Denisovans separated soon thereafter, and (iii) the subsequent Neanderthal population was large and deeply subdivided. They also (iv) support previous estimates of gene flow from Neanderthals into modern Eurasians. These results suggest an archaic human diaspora early in the Middle Pleistocene.


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