The identification, cloning, and sequence analysis of the coat protein coding region of a birch isolate (I2) of cherry leaf roll nepovirus

1993 ◽  
Vol 131 (1-2) ◽  
pp. 209-215 ◽  
Author(s):  
N. W. Scott ◽  
J. I. Cooper ◽  
M. L. Edwards
2004 ◽  
Vol 149 (8) ◽  
Author(s):  
H. K. C. Laidlaw ◽  
D. M. Persley ◽  
C. K. Pallaghy ◽  
I. D. Godwin

1994 ◽  
Vol 138 (1-2) ◽  
pp. 17-25 ◽  
Author(s):  
B. -Y. Chang ◽  
C. R. Huang ◽  
S. -D. Yeh ◽  
J. -K. Chiang ◽  
L. -M. Hung ◽  
...  

2001 ◽  
Vol 75 (5) ◽  
pp. 2411-2420 ◽  
Author(s):  
György Szittya ◽  
József Burgyán

ABSTRACT Avirulent genes either directly or indirectly produce elicitors that are recognized by specific receptors of plant resistance genes, leading to the induction of host defense responses such as hypersensitive reaction (HR). HR is characterized by the development of a necrotic lesion at the site of infection which results in confinement of the invader to this area. Artificial chimeras and mutants of cymbidium ringspot (CymRSV) and the pepper isolate of tomato bushy stunt (TBSV-P) tombusviruses were used to determine viral factors involved in the HR resistance phenotype of Datura stramonium upon infection with CymRSV. A series of constructs carrying deletions and frameshifts of the CymRSV coat protein (CP) undoubtedly clarified that an 860-nucleotide (nt)-long RNA sequence in the CymRSV CP coding region (between nt 2666 and 3526) is the elicitor of a very rapid HR-like response of D. stramonium which limits the virus spread. This finding provides the first evidence that an untranslatable RNA can trigger an HR-like resistance response in virus-infected plants. The effectiveness of the resistance response might indicate that other nonhost resistance could also be due to RNA-mediated HR. It is an appealing explanation that RNA-mediated HR has evolved as an alternative defense strategy against RNA viruses.


Plant Disease ◽  
2012 ◽  
Vol 96 (3) ◽  
pp. 462-462 ◽  
Author(s):  
S. Lunden ◽  
W. Qiu

Grapevine leaf roll disease (GLRD) is one of the most prevalent viral diseases in vineyards worldwide. At least 10 Grapevine leafroll-associated viruses (GLRaV-1 to -7, and -9, -10, and -11) are associated with GLRD. GLRaV-2 has a number of distinct isolates that are associated not only with GLRD, but also with graft incompatibility, young vine decline, and rootstock stem lesions. In the United States, GLRaV-2 isolates have been reported in the states of California (4), New York (1), Oregon, and Washington (3). A survey of grapevine viruses was conducted on seven grape cultivars, Norton, Chambourcin, Chardonel, Vignoles, Vidal Blanc, Traminette, and Cayuga White, in a vineyard located at Mountain Grove, MO during the falls of 2009 and 2010 and late summer of 2011. Vines from each cultivar were assigned into three blocks. From each block, six individual vines were randomly selected. Phloem scrapings were collected for detecting viruses by ELISA and reverse-transcription (RT)-PCR. To test for GLRaV-2, a set of primers, GLRaV-2-Forward (5′-GGTGATAACCGACGCCTCTA, nt 6745 to 6764) and GLRaV-2-Reverse (5′-CCTAGCTGACGCAGATTGCT, nt 7268 to 7287), were designed from the coat protein coding region as reported previously (2). GRLaV-2 was detected only in the samples of ‘Vidal Blanc’. The detection of GLRaV-2 was further verified by ELISA using GRLaV-2-specific antisera (Bioreba AG, Reinach, Switzerland). The GLRaV-2-infected ‘Vidal Blanc’ vines did not exhibit visible symptoms. The RT-PCR amplified 543-bp cDNA fragments were isolated from agarose gel and cloned into the pCR2.1 vector (Invitrogen, Carlsbad, CA). Plasmid DNA was purified from three individual clones and sequenced from both directions. Comparison of the 543-bp sequences showed that the sequences shared 99% nt identity with the corresponding regions of 21 GLRaV-2 isolates, including PMC-083 isolate from Croatia (GenBank Accession No. HM185277), LN isolate from China (GenBank No. FJ786017), SE isolate from Brazil (GenBank No. EU204909), and four isolates from Washington (GenBank Nos. EU760836, 760838, 760843, and 760848). ‘Vidal Blanc’ is a white interspecific hybrid grape. Absence of visible symptoms on this cultivar emphasizes the importance of planting certified grapevines that have been indexed for viruses. Discovery of GLRaV-2 in asymptomatic white grape cultivars will warn growers on the potential damages and epidemics of GLRD in Midwest vineyards and promote planting clean grapevines. To our knowledge, this is the first report of GLRaV-2 in grapevines in Missouri. References: (1) M. Fuchs et al. Plant Dis. 93:395, 2009. (2) G. Gambino and I. Gribaudo. Phytopathology 96:1223, 2006. (3) R. R. Martin et al. Plant Dis. 89:763, 2005. (4) A. Rowhani et al. Phytopathology (Abstr.) 92:(suppl.):S71, 2002.


2000 ◽  
Vol 148 (9-10) ◽  
pp. 515-521 ◽  
Author(s):  
J. Chen ◽  
J. Chen ◽  
J. Du ◽  
M. J. Adams

Stroke ◽  
2015 ◽  
Vol 46 (suppl_1) ◽  
Author(s):  
Myriam Fornage ◽  
Joshua C Bis ◽  
Vincent Chouraki ◽  
Li An Lin ◽  
Anita DeStefano ◽  
...  

White matter hyperintensities (WMH) detected on MRI are commonly identified abnormalities in the adult brain, and are associated with a greater risk of stroke, dementia, and death. Genetic factors play a significant role in WMH etiology, yet, common genetic variants identified by GWAS explain little of the variance in WMH burden. Rare variants with larger effect on the phenotype may be identified from sequence analysis of the protein-coding region of the genome (exome). We sequenced the protein-coding regions of 16,541 genes in 2510 individuals of European or African ancestry from three NHLBI cohorts, and investigated whether putatively functional exomic variants were associated with WMH burden, either individually or in aggregate within a gene. Within each cohort, we used the SeqMeta R package to compute race-specific score statistics for each variant and genotypic covariance matrices within predefined gene regions. These were then combined by meta-analysis to generate single-variant and gene-based tests of association. Only missense, nonsense, and splice variants were included in the analyses. Analyses of 12,790 single variants with minor allele frequency (MAF)≥1% did not identify statistically significant associations based on a Bonferroni-corrected significance threshold. The most significantly associated variant was a common missense variant in the ELL gene (p=2.6x10-5). In the sequence kernel association test (SKAT), which included variants with MAF<5%, five genes were significantly associated with WMH burden (p<0.05/16,541). These have known function in phospholipid binding, transport, and signaling (3 genes); Abeta metabolism (1 gene); and have been previously implicated in microvascular complications of diabetes, hypertension, and obesity. Among 35 candidate genes mapping to five previously reported WMH GWAS loci, association of MRPL38 (chr17q25) was nominally significant by SKAT (p=0.011). This gene contained two missense variants (MAF~1%) also nominally significantly associated with WMH (p=0.040 and 0.017). This study suggests that rare and low frequency variants significantly influence WMH burden and that genes involved in cardiovascular health and disease play a role in WMH etiology.


1998 ◽  
Vol 143 (6) ◽  
pp. 1145-1153 ◽  
Author(s):  
J. A. Handley ◽  
G. R. Smith ◽  
J. L. Dale ◽  
R. M. Harding

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