scholarly journals Reproducing kernel Hilbert space for some non-Gaussian processes

1985 ◽  
pp. 128-140
Author(s):  
Murad S. Taqqu ◽  
Claudia Czado
Keyword(s):  
Hilbert Space ◽  
Gaussian Processes ◽  
Reproducing Kernel ◽  
Reproducing Kernel Hilbert Space ◽  
Non Gaussian

scholarly journals Detecting periodicities with Gaussian processes

2016 ◽  
Vol 2 ◽  
pp. e50 ◽  
Author(s):  
Nicolas Durrande ◽  
James Hensman ◽  
Magnus Rattray ◽  
Neil D. Lawrence
Keyword(s):  
Hilbert Space ◽  
Gaussian Process ◽  
Gaussian Processes ◽  
Covariance Function ◽  
Reproducing Kernel ◽  
Reproducing Kernel Hilbert Space ◽  
Gaussian Process Regression ◽  
Inner Product ◽  
Input Output ◽  
Periodic Data

We consider the problem of detecting and quantifying the periodic component of a function given noise-corrupted observations of a limited number of input/output tuples. Our approach is based on Gaussian process regression, which provides a flexible non-parametric framework for modelling periodic data. We introduce a novel decomposition of the covariance function as the sum of periodic and aperiodic kernels. This decomposition allows for the creation of sub-models which capture the periodic nature of the signal and its complement. To quantify the periodicity of the signal, we derive a periodicity ratio which reflects the uncertainty in the fitted sub-models. Although the method can be applied to many kernels, we give a special emphasis to the Matérn family, from the expression of the reproducing kernel Hilbert space inner product to the implementation of the associated periodic kernels in a Gaussian process toolkit. The proposed method is illustrated by considering the detection of periodically expressed genes in thearabidopsisgenome.

scholarly journals Detecting periodicities with Gaussian processes

2016 ◽  
Author(s):  
Nicolas Durrande ◽  
James Hensman ◽  
Magnus Rattray ◽  
Neil D Lawrence
Keyword(s):  
Hilbert Space ◽  
Gaussian Process ◽  
Gaussian Processes ◽  
Covariance Function ◽  
Reproducing Kernel ◽  
Reproducing Kernel Hilbert Space ◽  
Gaussian Process Regression ◽  
Inner Product ◽  
Input Output ◽  
Periodic Data

We consider the problem of detecting and quantifying the periodic component of a function given noise-corrupted observations of a limited number of input/output tuples. Our approach is based on Gaussian process regression which provides a flexible non-parametric framework for modelling periodic data. We introduce a novel decomposition of the covariance function as the sum of periodic and aperiodic kernels. This decomposition allows for the creation of sub-models which capture the periodic nature of the signal and its complement. To quantify the periodicity of the signal, we derive a periodicity ratio which reflects the uncertainty in the fitted sub-models. Although the method can be applied to many kernels, we give a special emphasis to the Matérn family, from the expression of the reproducing kernel Hilbert space inner product to the implementation of the associated periodic kernels in a Gaussian process toolkit. The proposed method is illustrated by considering the detection of periodically expressed genes in the arabidopsis genome.

scholarly journals Detecting periodicities with Gaussian processes

2016 ◽  
Author(s):  
Nicolas Durrande ◽  
James Hensman ◽  
Magnus Rattray ◽  
Neil D Lawrence
Keyword(s):  
Hilbert Space ◽  
Gaussian Process ◽  
Gaussian Processes ◽  
Covariance Function ◽  
Reproducing Kernel ◽  
Reproducing Kernel Hilbert Space ◽  
Gaussian Process Regression ◽  
Inner Product ◽  
Input Output ◽  
Periodic Data

We consider the problem of detecting and quantifying the periodic component of a function given noise-corrupted observations of a limited number of input/output tuples. Our approach is based on Gaussian process regression which provides a flexible non-parametric framework for modelling periodic data. We introduce a novel decomposition of the covariance function as the sum of periodic and aperiodic kernels. This decomposition allows for the creation of sub-models which capture the periodic nature of the signal and its complement. To quantify the periodicity of the signal, we derive a periodicity ratio which reflects the uncertainty in the fitted sub-models. Although the method can be applied to many kernels, we give a special emphasis to the Matérn family, from the expression of the reproducing kernel Hilbert space inner product to the implementation of the associated periodic kernels in a Gaussian process toolkit. The proposed method is illustrated by considering the detection of periodically expressed genes in the arabidopsis genome.

scholarly journals Lebesgue Decomposition of Non-Commutative Measures

2020 ◽  
Author(s):  
Michael T Jury ◽  
Robert T W Martin
Keyword(s):  
Hilbert Space ◽  
Reproducing Kernel ◽  
Fock Space ◽  
Reproducing Kernel Hilbert Space ◽  
Semigroup Algebra ◽  
Space Theory ◽  
Lebesgue Decomposition ◽  
Sesquilinear Forms ◽  
Positive Linear Functionals ◽  
Algebra Theory

Abstract We extend the Lebesgue decomposition of positive measures with respect to Lebesgue measure on the complex unit circle to the non-commutative (NC) multi-variable setting of (positive) NC measures. These are positive linear functionals on a certain self-adjoint subspace of the Cuntz–Toeplitz $C^{\ast }-$algebra, the $C^{\ast }-$algebra of the left creation operators on the full Fock space. This theory is fundamentally connected to the representation theory of the Cuntz and Cuntz–Toeplitz $C^{\ast }-$algebras; any *−representation of the Cuntz–Toeplitz $C^{\ast }-$algebra is obtained (up to unitary equivalence), by applying a Gelfand–Naimark–Segal construction to a positive NC measure. Our approach combines the theory of Lebesgue decomposition of sesquilinear forms in Hilbert space, Lebesgue decomposition of row isometries, free semigroup algebra theory, NC reproducing kernel Hilbert space theory, and NC Hardy space theory.

scholarly journals Multi-omics-based prediction of hybrid performance in canola

2021 ◽  
Author(s):  
Dominic Knoch ◽  
Christian R. Werner ◽  
Rhonda C. Meyer ◽  
David Riewe ◽  
Amine Abbadi ◽  
...  
Keyword(s):  
Hilbert Space ◽  
Genetic Markers ◽  
Reproducing Kernel ◽  
Prediction Models ◽  
Agronomic Traits ◽  
Reproducing Kernel Hilbert Space ◽  
Hybrid Performance ◽  
Hybrid Prediction ◽  
Gaussian Kernels ◽  
Breeding Programmes

Abstract Key message Complementing or replacing genetic markers with transcriptomic data and use of reproducing kernel Hilbert space regression based on Gaussian kernels increases hybrid prediction accuracies for complex agronomic traits in canola. In plant breeding, hybrids gained particular importance due to heterosis, the superior performance of offspring compared to their inbred parents. Since the development of new top performing hybrids requires labour-intensive and costly breeding programmes, including testing of large numbers of experimental hybrids, the prediction of hybrid performance is of utmost interest to plant breeders. In this study, we tested the effectiveness of hybrid prediction models in spring-type oilseed rape (Brassica napus L./canola) employing different omics profiles, individually and in combination. To this end, a population of 950 F1 hybrids was evaluated for seed yield and six other agronomically relevant traits in commercial field trials at several locations throughout Europe. A subset of these hybrids was also evaluated in a climatized glasshouse regarding early biomass production. For each of the 477 parental rapeseed lines, 13,201 single nucleotide polymorphisms (SNPs), 154 primary metabolites, and 19,479 transcripts were determined and used as predictive variables. Both, SNP markers and transcripts, effectively predict hybrid performance using (genomic) best linear unbiased prediction models (gBLUP). Compared to models using pure genetic markers, models incorporating transcriptome data resulted in significantly higher prediction accuracies for five out of seven agronomic traits, indicating that transcripts carry important information beyond genomic data. Notably, reproducing kernel Hilbert space regression based on Gaussian kernels significantly exceeded the predictive abilities of gBLUP models for six of the seven agronomic traits, demonstrating its potential for implementation in future canola breeding programmes.

scholarly journals KTBoost: Combined Kernel and Tree Boosting

2021 ◽  
Author(s):  
Fabio Sigrist
Keyword(s):  
Hilbert Space ◽  
Reproducing Kernel ◽  
Predictive Accuracy ◽  
Reproducing Kernel Hilbert Space ◽  
Regression Tree ◽  
Regression Function ◽  
Data Sets ◽  
Regression Functions ◽  
Boosting Algorithm

AbstractWe introduce a novel boosting algorithm called ‘KTBoost’ which combines kernel boosting and tree boosting. In each boosting iteration, the algorithm adds either a regression tree or reproducing kernel Hilbert space (RKHS) regression function to the ensemble of base learners. Intuitively, the idea is that discontinuous trees and continuous RKHS regression functions complement each other, and that this combination allows for better learning of functions that have parts with varying degrees of regularity such as discontinuities and smooth parts. We empirically show that KTBoost significantly outperforms both tree and kernel boosting in terms of predictive accuracy in a comparison on a wide array of data sets.

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