scholarly journals Reverse chemical ecology in a moth: machine learning on odorant receptors identifies new behaviorally active agonists

Author(s):  
Gabriela Caballero-Vidal ◽  
Cédric Bouysset ◽  
Jérémy Gévar ◽  
Hayat Mbouzid ◽  
Céline Nara ◽  
...  

AbstractThe concept of reverse chemical ecology (exploitation of molecular knowledge for chemical ecology) has recently emerged in conservation biology and human health. Here, we extend this concept to crop protection. Targeting odorant receptors from a crop pest insect, the noctuid moth Spodoptera littoralis, we demonstrate that reverse chemical ecology has the potential to accelerate the discovery of novel crop pest insect attractants and repellents. Using machine learning, we first predicted novel natural ligands for two odorant receptors, SlitOR24 and 25. Then, electrophysiological validation proved in silico predictions to be highly sensitive, as 93% and 67% of predicted agonists triggered a response in Drosophila olfactory neurons expressing SlitOR24 and SlitOR25, respectively, despite a lack of specificity. Last, when tested in Y-maze behavioral assays, the most active novel ligands of the receptors were attractive to caterpillars. This work provides a template for rational design of new eco-friendly semiochemicals to manage crop pest populations.

2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Qiuling Tao ◽  
Pengcheng Xu ◽  
Minjie Li ◽  
Wencong Lu

AbstractThe development of materials is one of the driving forces to accelerate modern scientific progress and technological innovation. Machine learning (ML) technology is rapidly developed in many fields and opening blueprints for the discovery and rational design of materials. In this review, we retrospected the latest applications of ML in assisting perovskites discovery. First, the development tendency of ML in perovskite materials publications in recent years was organized and analyzed. Second, the workflow of ML in perovskites discovery was introduced. Then the applications of ML in various properties of inorganic perovskites, hybrid organic–inorganic perovskites and double perovskites were briefly reviewed. In the end, we put forward suggestions on the future development prospects of ML in the field of perovskite materials.


AI ◽  
2021 ◽  
Vol 2 (1) ◽  
pp. 34-47
Author(s):  
Borja Espejo-Garcia ◽  
Ioannis Malounas ◽  
Eleanna Vali ◽  
Spyros Fountas

In the past years, several machine-learning-based techniques have arisen for providing effective crop protection. For instance, deep neural networks have been used to identify different types of weeds under different real-world conditions. However, these techniques usually require extensive involvement of experts working iteratively in the development of the most suitable machine learning system. To support this task and save resources, a new technique called Automated Machine Learning has started being studied. In this work, a complete open-source Automated Machine Learning system was evaluated with two different datasets, (i) The Early Crop Weeds dataset and (ii) the Plant Seedlings dataset, covering the weeds identification problem. Different configurations, such as the use of plant segmentation, the use of classifier ensembles instead of Softmax and training with noisy data, have been compared. The results showed promising performances of 93.8% and 90.74% F1 score depending on the dataset used. These performances were aligned with other related works in AutoML, but they are far from machine-learning-based systems manually fine-tuned by human experts. From these results, it can be concluded that finding a balance between manual expert work and Automated Machine Learning will be an interesting path to work in order to increase the efficiency in plant protection.


Author(s):  
K Balakrishna ◽  
Fazil Mohammed ◽  
C.R. Ullas ◽  
C.M. Hema ◽  
S.K. Sonakshi

2020 ◽  
Vol 13 (5) ◽  
pp. 1673-1677 ◽  
Author(s):  
Thomas Perrot ◽  
Guillaume Salzet ◽  
Nadine Amusant ◽  
Jacques Beauchene ◽  
Philippe Gérardin ◽  
...  

2020 ◽  
Vol 6 (24) ◽  
pp. eaaz6293 ◽  
Author(s):  
Kanuj Mishra ◽  
Mariia Stankevych ◽  
Juan Pablo Fuenzalida-Werner ◽  
Simon Grassmann ◽  
Vipul Gujrati ◽  
...  

We introduce two photochromic proteins for cell-specific in vivo optoacoustic (OA) imaging with signal unmixing in the temporal domain. We show highly sensitive, multiplexed visualization of T lymphocytes, bacteria, and tumors in the mouse body and brain. We developed machine learning–based software for commercial imaging systems for temporal unmixed OA imaging, enabling its routine use in life sciences.


Science ◽  
2018 ◽  
Vol 361 (6400) ◽  
pp. 360-365 ◽  
Author(s):  
Benjamin Sanchez-Lengeling ◽  
Alán Aspuru-Guzik

The discovery of new materials can bring enormous societal and technological progress. In this context, exploring completely the large space of potential materials is computationally intractable. Here, we review methods for achieving inverse design, which aims to discover tailored materials from the starting point of a particular desired functionality. Recent advances from the rapidly growing field of artificial intelligence, mostly from the subfield of machine learning, have resulted in a fertile exchange of ideas, where approaches to inverse molecular design are being proposed and employed at a rapid pace. Among these, deep generative models have been applied to numerous classes of materials: rational design of prospective drugs, synthetic routes to organic compounds, and optimization of photovoltaics and redox flow batteries, as well as a variety of other solid-state materials.


2014 ◽  
Vol 50 (49) ◽  
pp. 6475-6478 ◽  
Author(s):  
Sufang Ma ◽  
De-Cai Fang ◽  
Baoming Ning ◽  
Minfeng Li ◽  
Lan He ◽  
...  

A small-molecule fluorogenic probe for nitric oxide (NO) detection based on a new switching mechanism is developedviaa rational design.


RSC Advances ◽  
2015 ◽  
Vol 5 (48) ◽  
pp. 38354-38360 ◽  
Author(s):  
An-qi Yang ◽  
Dong Wang ◽  
Xiang Wang ◽  
Yu Han ◽  
Xue-bin Ke ◽  
...  

A simple SERS immunosensor based on AuNRs assembly was developed for rapid detection of specific antigen in early diagnostics.


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