Exploiting strain diversity and rational engineering strategies to enhance recombinant cellulase secretion by Saccharomyces cerevisiae

2020 ◽  
Vol 104 (12) ◽  
pp. 5163-5184 ◽  
Author(s):  
S. A. Davison ◽  
R. den Haan ◽  
W. H. van Zyl
Fermentation ◽  
2020 ◽  
Vol 6 (3) ◽  
pp. 89
Author(s):  
David Castrillo ◽  
Noemi Neira ◽  
Pilar Blanco

Yeast play an essential role in wine quality. The dynamics of yeast strains during fermentation determine the final chemical and sensory characteristics of wines. This study aims to evaluate the Saccharomyces cerevisiae strains diversity in organic wineries from Galicia (NW Spain). Samples from spontaneous fermentations were taken in five wineries over three consecutive years (2013 to 2015). The samples were transported to the laboratory and processed following standard methodology for yeast isolation. S. cerevisiae strains were differentiated by mDNA-RFLPs. A total of 66 different strains were identified. Some of them presented a wide distribution and appeared in several wineries. However, other strains were typical from a specific winery. Similarity analysis using two different statistical tests showed significant differences in strain diversity among wineries. The results also revealed high biodiversity indexes; however, only some strains showed an important incidence in their distribution and frequency. Our findings confirmed that spontaneous fermentation favored the existence of a high S. cerevisiae strain diversity in organic wineries from Galicia. The presence of different yeasts during fermentation, specially winery-specific strains, contribute to increased wine complexity and differentiation.


2019 ◽  
Vol 19 (5) ◽  
Author(s):  
R N de Witt ◽  
H Kroukamp ◽  
W H Van Zyl ◽  
I T Paulsen ◽  
H Volschenk

ABSTRACTDecoding the genetic basis of lignocellulosic inhibitor tolerance in Saccharomyces cerevisiae is crucial for rational engineering of bioethanol strains with enhanced robustness. The genetic diversity of natural strains present an invaluable resource for the exploration of complex traits of industrial importance from a pan-genomic perspective to complement the limited range of specialised, tolerant industrial strains. Natural S. cerevisiae isolates have lately garnered interest as a promising toolbox for engineering novel, genetically encoded tolerance phenotypes into commercial strains. To this end, we investigated the genetic basis for lignocellulosic inhibitor tolerance of natural S. cerevisiae isolates. A total of 12 quantitative trait loci underpinning tolerance were identified by next-generation sequencing linked bulk-segregant analysis of superior interbred pools. Our findings corroborate the current perspective of lignocellulosic inhibitor tolerance as a multigenic, complex trait. Apart from a core set of genetic variants required for inhibitor tolerance, an additional genetic background-specific response was observed. Functional analyses of the identified genetic loci revealed the uncharacterised ORF, YGL176C and the bud-site selection XRN1/BUD13 as potentially beneficial alleles contributing to tolerance to a complex lignocellulosic inhibitor mixture. We present evidence for the consideration of both regulatory and coding sequence variants for strain improvement.


2017 ◽  
Vol 12 (1) ◽  
pp. 108-124 ◽  
Author(s):  
Heinrich Kroukamp ◽  
Riaan den Haan ◽  
John‐Henry van Zyl ◽  
Willem Heber van Zyl

2013 ◽  
Vol 102 ◽  
pp. 150-156 ◽  
Author(s):  
Heinrich Kroukamp ◽  
Riaan den Haan ◽  
Niël van Wyk ◽  
Willem H. van Zyl

OENO One ◽  
2004 ◽  
Vol 38 (3) ◽  
pp. 181
Author(s):  
Benoit Divol ◽  
Aline Lonvaud-Funel

<p style="text-align: justify;"><em>Botrytis</em>-affected wines are microbiologically unstable. Fermentation can occasionally occur during maturing time or bottle-ageing. However, wines which undergo refermentations seem to be free of yeasts. This work deals with microbial aspects and ecology of wines during alcoholic fermentation, then during refermentation. Yeast survival after stopping the alcoholic fermentation by sulphur dioxide addition is considered. Results suggest that most yeasts could survive in sweet wine under the viable but non-culturable (VBNC) state. The increase of acetaldehyde these wines in response to sulfiting is known for long time but not the conditions of its formation. In this work we show that it is probably the key of the refermentation phenomenon, through the increase of the binding power. During maturing successive cycles occur: acetaldehyde consumption, revival, death and/or new enter into VBNC state accompanied by acetaldehyde formation which increased the binding power. Then as molecular SO2 became too low, yeasts could start a new fermentation. In this work, an ecology study was also undertaken, to understand the effect of SO2 on yeast biodiversity. Most of the fermentative yeasts could survive especially <em>Saccharomyces cerevisiae</em> and <em>Zygosaccharomyces </em>sp., together with other yeast genera. In regard to <em>Saccharomyces cerevisiae</em> only which is often responsible for the refermentation phenomenon, this work concluded on the decrease of strain diversity to only one or two strains, in spite of the high degree of diversity during the alcoholic fermentation. The intra-species selection probably conducted to sulfite-resistant strains.</p>


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