Rapid detection of genetically diverse tomato black ring virus isolates using reverse transcription loop-mediated isothermal amplification

2015 ◽  
Vol 160 (12) ◽  
pp. 3075-3078 ◽  
Author(s):  
Beata Hasiów-Jaroszewska ◽  
Daria Budzyńska ◽  
Natasza Borodynko ◽  
Henryk Pospieszny
Keyword(s):  
Reverse Transcription ◽  
Rapid Detection ◽  
Black Ring ◽  
Isothermal Amplification ◽  
Tomato Black Ring Virus ◽  
Loop Mediated Isothermal Amplification ◽  
Virus Isolates

scholarly journals Development and validation of a one-step reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of ZIKV in patient samples from Brazil

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Severino Jefferson Ribeiro da Silva ◽  
Keith Pardee ◽  
Udeni B. R. Balasuriya ◽  
Lindomar Pena
Keyword(s):  
Reverse Transcription ◽  
Rapid Detection ◽  
Quantitative Polymerase Chain Reaction ◽  
Rna Extraction ◽  
Lamp Assay ◽  
Isothermal Amplification ◽  
Serum Samples ◽  
Low Resource ◽  
Loop Mediated Isothermal Amplification ◽  
One Step

AbstractWe have previously developed and validated a one-step assay based on reverse transcription loop-mediated isothermal amplification (RT-LAMP) for rapid detection of the Zika virus (ZIKV) from mosquito samples. Patient diagnosis of ZIKV is currently carried out in centralized laboratories using the reverse transcription-quantitative polymerase chain reaction (RT-qPCR), which, while the gold standard molecular method, has several drawbacks for use in remote and low-resource settings, such as high cost and the need of specialized equipment. Point-of-care (POC) diagnostic platforms have the potential to overcome these limitations, especially in low-resource countries where ZIKV is endemic. With this in mind, here we optimized and validated our RT-LAMP assay for rapid detection of ZIKV from patient samples. We found that the assay detected ZIKV from diverse sample types (serum, urine, saliva, and semen) in as little as 20 min, without RNA extraction. The RT-LAMP assay was highly specific and up to 100 times more sensitive than RT-qPCR. We then validated the assay using 100 patient serum samples collected from suspected cases of arbovirus infection in the state of Pernambuco, which was at the epicenter of the last Zika epidemic. Analysis of the results, in comparison to RT-qPCR, found that the ZIKV RT-LAMP assay provided sensitivity of 100%, specificity of 93.75%, and an overall accuracy of 95.00%. Taken together, the RT-LAMP assay provides a straightforward and inexpensive alternative for the diagnosis of ZIKV from patients and has the potential to increase diagnostic capacity in ZIKV-affected areas, particularly in low and middle-income countries.

Reverse transcription loop-mediated isothermal amplification for rapid detection of the newly emerged poultry Flavivirus

2012 ◽  
Vol 58 (4) ◽  
pp. 277-282 ◽  
Author(s):  
Zhaolong Li ◽  
Shaoying Chen ◽  
Shao Wang ◽  
Shilong Chen ◽  
Fengqian Lin
Keyword(s):  
Reverse Transcription ◽  
Rapid Detection ◽  
Isothermal Amplification ◽  
Loop Mediated Isothermal Amplification

scholarly journals Reverse Transcription Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Soybean yellow mottle mosaic virus

2016 ◽  
Vol 22 (3) ◽  
pp. 178-183
Author(s):  
Dae Hyeon Bae ◽  
Chung Youl Park ◽  
Bong-Sub Kim ◽  
Yeong-Hoon Lee ◽  
Young-Nam Yoon ◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Reverse Transcription ◽  
Rapid Detection ◽  
Isothermal Amplification ◽  
Loop Mediated Isothermal Amplification ◽  
Amplification Assay ◽  
Yellow Mottle

Development of reverse transcription loop-mediated isothermal amplification assay for sensitive and rapid detection of Hosta virus X

2018 ◽  
Vol 166 (4) ◽  
pp. 291-297 ◽  
Author(s):  
Yongjiang Zhang ◽  
Xiaojuan Li ◽  
Man Li ◽  
Yanhong Qiu ◽  
Guifen Li ◽  
...  
Keyword(s):  
Reverse Transcription ◽  
Rapid Detection ◽  
Isothermal Amplification ◽  
Loop Mediated Isothermal Amplification ◽  
Amplification Assay
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