Key issues in the acquisition and analysis of qualitative and quantitative mass spectrometry data for peptide-centric proteomic experiments

Amino Acids ◽  
2012 ◽  
Vol 43 (3) ◽  
pp. 1075-1085 ◽  
Author(s):  
Andrew J. Thompson ◽  
Mika Abu ◽  
Diane P. Hanger
2009 ◽  
Vol 71 (6) ◽  
pp. 601-608 ◽  
Author(s):  
Katrin Haegler ◽  
Nikola S. Mueller ◽  
Giuseppina Maccarrone ◽  
Eva Hunyadi-Gulyas ◽  
Christian Webhofer ◽  
...  

2016 ◽  
Vol 15 (8) ◽  
pp. 2829-2838 ◽  
Author(s):  
Christopher J. Mitchell ◽  
Min-Sik Kim ◽  
Chan Hyun Na ◽  
Akhilesh Pandey

2021 ◽  
Author(s):  
Charlotte Repton ◽  
C Fiona Cullen ◽  
Mariana FA Costa ◽  
Christos Spanos ◽  
Juri Rappsilber ◽  
...  

Global regulation of spindle-associated proteins is crucial in oocytes due to the absence of centrosomes and their very large cytoplasmic volume, but little is known about how this is achieved beyond involvement of the Ran-importin pathway. We previously uncovered a novel regulatory mechanism in Drosophila oocytes, in which the phospho-docking protein 14-3-3 suppresses microtubule binding of Kinesin-14/Ncd away from chromosomes. Here we report systematic identification of microtubule-associated proteins regulated by 14-3-3 from Drosophila oocytes. Proteins from ovary extract were co-sedimented with microtubules in the presence or absence of a 14-3-3 inhibitor. Through quantitative mass-spectrometry, we identified proteins or complexes whose ability to binding microtubules is suppressed by 14-3-3, including the chromosomal passenger complex (CPC), the centralspindlin complex and Kinesin-14/Ncd. We showed that 14-3-3 binds to the disordered region of Borealin, and this binding is regulated differentially by two phosphorylations on Borealin. Mutations at these two phospho-sites compromised normal Borealin localisation and centromere bi-orientation in oocytes, showing that phospho-regulation of 14-3-3 binding is important for Borealin localisation and function. The mass spectrometry data are available from ProteomeXchange, identifier ID to be provided when available, PXD000xxx.


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