The role of a real-time PCR technology for rapid detection and identification of bacterial and fungal pathogens in whole-blood samples

2011 ◽  
Vol 17 (3) ◽  
pp. 327-333 ◽  
Author(s):  
Hideaki Obara ◽  
Minoru Tanabe ◽  
Masaki Kitajima ◽  
Yuko Kitagawa ◽  
Masaki Kitajima ◽  
...  
2007 ◽  
Vol 197 (3) ◽  
pp. 313-324 ◽  
Author(s):  
Lutz Eric Lehmann ◽  
Klaus-Peter Hunfeld ◽  
Thomas Emrich ◽  
Gerd Haberhausen ◽  
Heimo Wissing ◽  
...  

2013 ◽  
Vol 2013 ◽  
pp. 1-8 ◽  
Author(s):  
Paolo Gaibani ◽  
Mara Mariconti ◽  
Gloria Bua ◽  
Sonia Bonora ◽  
Davide Sassera ◽  
...  

Molecular methods are important tools in the diagnosis of bloodstream bacterial infections, in particular in patients treated with antimicrobial therapy, due to their quick turn-around time. Here we describe a new broad-range real-time PCR targeting the 23S rDNA gene and capable to detect as low as 10 plasmid copies per reaction of targeted bacterial 23S rDNA gene. Two commercially available DNA extraction kits were evaluated to assess their efficiency for the extraction of plasma and whole blood samples spiked with different amount of eitherStaphylococcus aureusorEscherichia coli, in order to find the optimal extraction method to be used. Manual QIAmp extraction method with enzyme pre-treatment resulted the most sensitive for detection of bacterial load. Sensitivity of this novel assay ranged between 10 and 103 CFU per PCR reaction forE. coliandS. aureusin human whole blood samples depending on the extraction methods used. Analysis of plasma samples showed a 10- to 100-fold reduction of bacterial 23S rDNA in comparison to the corresponding whole blood specimens, thus indicating that whole blood is the preferential sample type to be used in this real-time PCR protocol. Our results thus show that the 23S rDNA gene represents an optimal target for bacteria quantification in human whole blood.


2006 ◽  
Vol 36 ◽  
pp. S26
Author(s):  
C. Deback ◽  
S. Akhavan ◽  
S. Blanc-Perrel ◽  
F. Dupuis ◽  
S. Schaffer ◽  
...  

2009 ◽  
Vol 46 ◽  
pp. S50
Author(s):  
B.D.A. Michelin ◽  
M. Bozic ◽  
S. Hammerschmidt ◽  
C. Homberg ◽  
D. Violan ◽  
...  

2021 ◽  
Author(s):  
Olga Lucia Herrán Ramírez ◽  
Huarrisson Azevedo Santos ◽  
Patrícia Gonzaga Paulino ◽  
Carolina Soares van der Meer ◽  
José Luis Rodríguez Bautista ◽  
...  

Abstract A cross-sectional study was conducted in Colombia to recover Brucella spp. DNA from bovine whole-blood samples through probe-based real-time PCR (Probe-qPCR) and by an SNP-based assay, differentiating vaccine strains from field strains. The associated factors for the presence of Brucella-DNA were reported and evaluated using logistical regression models. A total of 656 random cows from 40 herds were selected. Template DNA was obtained based on a modified salting-out protocol. The Probe- qPCR assay using bcsp31 gene amplification showed an efficiency of 92.35%, with a slope of -3.52 reached in the standard curve. The qPCR assay detected 9.5% (n = 62/656; 95% CI: 7.3,12.0) of the animals with Brucella-DNA presence, and 62.5% (n = 25/40; 95% CI: 45.8,77.3) of the herds with Brucella-DNA presence. Using the SNP-based assay, all positive samples were identified as field Brucella strains. In the final regression model at the animal-level, five variables were associated with Brucella-DNA presence: the use of bulls for mating, recorded history of reproductive problems, pregnant cows, parlor milking, and cows belonging to farms ≤ 200 m from the main road. At the herd-level, two variables were associated with Brucella-DNA presence: recorded history of reproductive problems and bulls' use for mating. Given the fluctuant brucellosis prevalence in endemic areas, updated epidemiological studies are necessary to evaluate the disease dynamic, and if established prevention and control measures have been effective or need to be adjusted. The increase in the prevalence of brucellosis in animal reservoirs creates an important risk of transmission in humans.


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