We studied the effects of commercial humic substances derived from leonardite at different rates (0, 0.25, 2, 10 g kg−1) and pH (4.5, 6.0, 8.0) on Cu and Zn mobility, to evaluate their use for remediation of metal contaminated mine soils and to optimize their application conditions. We conducted a single-step extraction experiment and analyzed extracts for metal concentrations, soluble organic carbon and their E4/E6 ratio (ratio of absorption at 465 to 665 nm). Metal speciation in a soil solution was simulated by the non-ideal competitive adsorption-Donnan (NICA-Donnan) model. Increasing the amount of humic substances and the pH caused higher release rates of soluble organic carbon with a lower humic/fulvic acids ratio. This led to a higher mobility of metals (up to 110 times Cu concentration in control and 12 times for Zn) due to the formation of soluble metal-humic complexes. Speciation modeling predicted that increasing rates of humic substances would result in a higher proportion of Cu and Zn associated with fulvic acids, more mobile than the humic acids fraction. Application of commercial leonardite humic substances at 2–10 g kg−1 and with pH levels similar to or below natural soil could be useful for assisted-phytoextraction of contaminated anthropogenic soils. High rates of humic substances in more alkaline conditions could entail a considerable risk of metal leaching to groundwater, toxicity and transfer to the trophic chain.