Mitochondrial DNA variation in natural populations of endangered Indian Feather-Back Fish, Chitala chitala

2011 ◽  
Vol 39 (2) ◽  
pp. 1765-1775 ◽  
Author(s):  
Anup Mandal ◽  
Vindhya Mohindra ◽  
Rajeev Kumar Singh ◽  
Peyush Punia ◽  
Ajay Kumar Singh ◽  
...  
1998 ◽  
Vol 7 (1) ◽  
pp. 19-33 ◽  
Author(s):  
JIANPING XU ◽  
RICHARD W. KERRIGAN ◽  
ANTON S. SONNENBERG ◽  
PHILIPPE CALLAC ◽  
PAUL A. HORGEN ◽  
...  

Genetics ◽  
1993 ◽  
Vol 135 (4) ◽  
pp. 1209-1220 ◽  
Author(s):  
J E Neigel ◽  
J C Avise

Abstract In rapidly evolving molecules, such as animal mitochondrial DNA, mutations that delineate specific lineages may not be dispersed at sufficient rates to attain an equilibrium between genetic drift and gene flow. Here we predict conditions that lead to nonequilibrium geographic distributions of mtDNA lineages, test the robustness of these predictions and examine mtDNA data sets for consistency with our model. Under a simple isolation by distance model, the variance of an mtDNA lineage's geographic distribution is expected be proportional to its age. Simulation results indicated that this relationship is fairly robust. Analysis of mtDNA data from natural populations revealed three qualitative distributional patterns: (1) significant departure of lineage structure from equilibrium geographic distributions, a pattern exhibited in three rodent species with limited dispersal; (2) nonsignificant departure from equilibrium expectations, exhibited by two avian and two marine fish species with potentials for relatively long-distance dispersal; and (3) a progression from nonequilibrium distributions for younger lineages to equilibrium distributions for older lineages, a condition displayed by one surveyed avian species. These results demonstrate the advantages of considering mutation and genealogy in the interpretation of mtDNA geographic variation.


2014 ◽  
Vol 281 (1792) ◽  
pp. 20141093 ◽  
Author(s):  
Gonçalo Silva ◽  
Fernando P. Lima ◽  
Paulo Martel ◽  
Rita Castilho

Natural populations of widely distributed organisms often exhibit genetic clinal variation over their geographical ranges. The European anchovy, Engraulis encrasicolus , illustrates this by displaying a two-clade mitochondrial structure clinally arranged along the eastern Atlantic. One clade has low frequencies at higher latitudes, whereas the other has an anti-tropical distribution, with frequencies decreasing towards the tropics. The distribution pattern of these clades has been explained as a consequence of secondary contact after an ancient geographical isolation. However, it is not unlikely that selection acts on mitochondria whose genes are involved in relevant oxidative phosphorylation processes. In this study, we performed selection tests on a fragment of 1044 bp of the mitochondrial cytochrome b gene using 455 individuals from 18 locations. We also tested correlations of six environmental features: temperature, salinity, apparent oxygen utilization and nutrient concentrations of phosphate, nitrate and silicate, on a compilation of mitochondrial clade frequencies from 66 sampling sites comprising 2776 specimens from previously published studies. Positive selection in a single codon was detected predominantly (99%) in the anti-tropical clade and temperature was the most relevant environmental predictor, contributing with 59% of the variance in the geographical distribution of clade frequencies. These findings strongly suggest that temperature is shaping the contemporary distribution of mitochondrial DNA clade frequencies in the European anchovy.


Genome ◽  
2005 ◽  
Vol 48 (6) ◽  
pp. 971-976 ◽  
Author(s):  
S M Pensel ◽  
J C Vilardi ◽  
M I Remis

RFLP analysis of mtDNA in natural populations is a valuable tool for phylogeographic and population genetic studies. The amplification of long DNA fragments using universal primers may contribute to the development of novel homologous probes in species for which no previous genomic information is available. Here we report how we obtained the complete mtDNA genome of Sinipta dalmani (Orthoptera) in 2 fragments (7 and 9 kb) using primers of conserved regions. The specificity of the PCR reactions was ultimately confirmed by several lines of evidence. These fragments were used as a probe for a mtDNA RFLP study in S. dalmani that analyzed the pattern of haplotype distribution and nucleotide diversity within and among chromosomally differentiated natural populations. Our results suggest that the restriction in gene flow detected at the molecular level may explain the chromosome differentiation detected previously and the maintenance of chromosome polymorphism in some areas of S. dalmani geographic distribution.Key words: long-PCR, mitochondrial DNA, universal primers, RFLP, grasshopper.


Insects ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 641
Author(s):  
Julio Chávez-Galarza ◽  
Ruth López-Montañez ◽  
Alejandra Jiménez ◽  
Rubén Ferro-Mauricio ◽  
Juan Oré ◽  
...  

Mitochondrial DNA variations of Peruvian honey bee populations were surveyed by using the tRNAleu-cox2 intergenic region. Only two studies have characterized these populations, indicating the presence of Africanized honey bee colonies in different regions of Peru and varied levels of Africanization, but the current status of its genetic diversity is unknown. A total of 512 honey bee colonies were sampled from three regions to characterize them. Our results revealed the presence of European and African haplotypes: the African haplotypes identified belong to sub-lineage AI (13) and sub-lineage AIII (03), and the European haplotypes to lineages C (06) and M (02). Of 24 haplotypes identified, 15 new sequences are reported here (11 sub-lineage AI, 2 sub-lineage AIII, and 2 lineage M). Peruvian honey bee populations presented a higher proportion from African than European haplotypes. High proportions of African haplotype were reported for Piura and Junín, unlike Lima, which showed more European haplotypes from lineage C. Few colonies belonging to lineage M would represent accidental purchase or traces of the introduction into Peru in the 19th century.


Waterbirds ◽  
2003 ◽  
Vol 26 (2) ◽  
pp. 196 ◽  
Author(s):  
Juliann L. Waits ◽  
Michael L. Avery ◽  
Mark E. Tobin ◽  
Paul L. Leberg

2017 ◽  
Vol 29 (5) ◽  
pp. 703-713
Author(s):  
Rhiannon E. McGeehan ◽  
Lewis A. Cockram ◽  
D. Timothy J. Littlewood ◽  
Kathleen Keatley ◽  
Diana M. Eccles ◽  
...  

AIDS ◽  
2014 ◽  
Vol 28 (13) ◽  
pp. 1871-1878 ◽  
Author(s):  
Brahim Aissani ◽  
Sadeep Shrestha ◽  
Howard W. Wiener ◽  
Jianming Tang ◽  
Richard A. Kaslow ◽  
...  

2015 ◽  
Vol 115 ◽  
pp. S43
Author(s):  
A. Voets ◽  
C. Oberije ◽  
G. Nalbantov ◽  
A.P. Stassen ◽  
A.T. Hendrickx ◽  
...  

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