Molecular characterization of two Pepino mosaic virus variants from imported tomato seed reveals high levels of sequence identity between Chilean and US isolates

Virus Genes ◽  
2007 ◽  
Vol 34 (1) ◽  
pp. 1-8 ◽  
Author(s):  
Kai-Shu Ling
Keyword(s):  
Mosaic Virus ◽  
Molecular Characterization ◽  
Tomato Seed ◽  
Pepino Mosaic Virus ◽  
Sequence Identity

scholarly journals Detection and Molecular Characterization of Watermelon Mosaic Virus (WMV) Spread Along the Syrian Coast

2021 ◽  
Vol 39 (1) ◽  
pp. 47-54
Author(s):  
Ahmad Mouhanna ◽  
◽  
Oos Ali Hasan ◽  
Hind Naaman Harhoush Al- Obaidi ◽  
◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Molecular Characterization ◽  
Plant Protection ◽  
Watermelon Mosaic Virus ◽  
Rt Pcr ◽  
Sequence Identity ◽  
Relative Incidence ◽  
Syrian Coast ◽  
Das Elisa

Mouhanna, A.M., A.A. Ali Hasan and H.N.H. Alobaidi. 2021. Detection and Molecular Characterization of Watermelon Mosaic Virus (WMV) Spread Along the Syrian Coast. Arab Journal of Plant Protection, 39(1): 47-54. Identification of local isolates of Watermelon mosaic virus (WMV) was investigated using serological and molecular methods. A total of 293 leaf samples from watermelon, zucchini, pumpkin, cucumber, pepper, beans and potato, with symptoms suggestive of virus infection, were collected from fields in two Syrian governorates (Latakia, Tartus) along the Syrian coast. DAS-ELISA tests revealed the presence of WMV in watermelon, zucchini, pumpkin and cucumber samples, with an average relative incidence of 36.95, 26.31, 29.27 and 37.70%, respectively. The infection of pepper with Watermelon mosaic virus was reported for the first time in Syria, with an average relative incidence of 2.94%. WMV was not detected in potato and beans, and these results were confirmed by RT-PCR. The local WMV isolate Cu4 was grouped with an Iranian isolate [EU660584.1] with 98.9% sequence identity. A Turkish isolate [EU660579] was grouped with local WMV isolate Wa2 with 98.3% sequence identity. Furthermore, two local isolates Zu6 and Cu8 represented one sub-group with 99.3% sequence identity. Keywords: Watermelon mosaic virus, DAS-ELISA, RT-PCR, CI, Phylogenetic Tree.

scholarly journals Metagenomic Analysis of Marigold: Mixed Infection Including Two New Viruses

Viruses ◽  
2021 ◽  
Vol 13 (7) ◽  
pp. 1254
Author(s):  
Hang Yin ◽  
Zheng Dong ◽  
Xulong Wang ◽  
Shuhao Lu ◽  
Fei Xia ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Mosaic Virus ◽  
Complete Genome ◽  
Plum Pox Virus ◽  
Cryptic Virus ◽  
Sequence Identity ◽  
Complete Genome Sequence Analysis ◽  
Wilt Virus ◽  
Broad Bean Wilt Virus

Marigold plants with symptoms of mosaic, crinkle, leaf curl and necrosis were observed and small RNA and ribo-depleted total RNA deep sequencing were conducted to identify the associated viruses. Broad bean wilt virus 2, cucumber mosaic virus, turnip mosaic virus, a new potyvirus tentatively named marigold mosaic virus (MMV) and a new partitivirus named as marigold cryptic virus (MCV) were finally identified. Complete genome sequence analysis showed MMV was 9811 nt in length, encoding a large polyprotein with highest aa sequence identity (57%) with the putative potyvirus polygonatumkingianum virus 1. Phylogenetic analysis with the definite potyviruses based on the polyprotein sequence showed MMV clustered closest to plum pox virus. The complete genome of MCV comprised of dsRNA1 (1583 bp) and dsRNA2 (1459 bp), encoding the RNA-dependent RNA polymerase (RdRp), and coat protein (CP), respectively. MCV RdRp shared the highest (75.7%) aa sequence identity with the unclassified partitivirus ambrosia cryptic virus 2, and 59.0%, 57.1%, 56.1%, 54.5% and 33.7% with the corresponding region of the definite delta-partitiviruses, pepper cryptic virus 2, beet cryptic virus 3, beet cryptic virus 2, pepper cryptic virus 1 and fig cryptic virus, respectively. Phylogenetic analysis based on the RdRp aa sequence showed MCV clustered into the delta-partitivirus group. These findings enriched our knowledge of viruses infecting marigold, but the association of the observed symptom and the identified viruses and the biological characterization of the new viruses should be further investigated.

Molecular characterization of the Indian strain of Apple mosaic virus isolated from apple (Malus domestica)

2009 ◽  
Vol 37 (4) ◽  
pp. 375-379 ◽  
Author(s):  
Tombisana Thokchom ◽  
Tanuja Rana ◽  
Vipin Hallan ◽  
Raja Ram ◽  
Aijaz A. Zaidi
Keyword(s):  
Mosaic Virus ◽  
Molecular Characterization ◽  
Malus Domestica ◽  
Indian Strain

Genetic characterization of Pepino mosaic virus isolates from Belgian greenhouse tomatoes reveals genetic recombination

2007 ◽  
Vol 121 (2) ◽  
pp. 131-146 ◽  
Author(s):  
Inge M. Hanssen ◽  
Anneleen Paeleman ◽  
Lieve Wittemans ◽  
Kris Goen ◽  
Bart Lievens ◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Genetic Characterization ◽  
Genetic Recombination ◽  
Pepino Mosaic Virus ◽  
Greenhouse Tomatoes ◽  
Virus Isolates

scholarly journals Detection and molecular characterization of Pepper mild mottle virus in Serbia

Genetika ◽  
2015 ◽  
Vol 47 (2) ◽  
pp. 651-663 ◽  
Author(s):  
Dragana Milosevic ◽  
Ivana Stankovic ◽  
Aleksandra Bulajic ◽  
Maja Ignjatov ◽  
Zorica Nikolic ◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Molecular Characterization ◽  
Great Influence ◽  
Alfalfa Mosaic Virus ◽  
Resistance Breeding ◽  
Elisa Test ◽  
Mottle Virus ◽  
Pepper Mild Mottle Virus ◽  
Das Elisa

During 2009 and 2010, a survey was conducted in pepper crops to detect the possible presence of Pepper mild mottle virus (PMMoV) in Serbia. A total of 239 pepper samples from 39 crops at 26 localities were collected and analyzed for the presence of PMMoV, Cucumber mosaic virus (CMV), Potato virus Y (PVY), and Alfalfa mosaic virus (AMV), using DAS-ELISA test. Although it was detected in a small percentage, PMMoV could pose a threat to pepper production in Serbia due to its rapid seed-borne spread. Presence of PMMoV was confirmed by serological and biological detection, followed by conventional reverse transcription RT-PCR, using primers specific for the RNA-dependent RNA polymerase (RdRp) and the coat protein (CP) genes. Molecular identification confirmed that the Serbian isolates belong to PMMoV pathotypes P1,2 which do not break the resistance gene L3. Reconstructed phylogenetic tree confirmed the allocation of the Serbian isolates together with the majority of PMMoV isolates which belong to pathotypes P1,2. This study represents the first serological and molecular characterization of PMMoV infection of pepper in Serbia, and provides important data on the population structure. The obtained data could have great influence on pepper production in Serbia as well as future pepper resistance breeding in the country.

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