De novo assembly and comparative transcriptome analysis: novel insights into sesquiterpenoid biosynthesis in Matricaria chamomilla L.

2018 ◽  
Vol 40 (7) ◽  
Author(s):  
Weiwei Zhang ◽  
Tingting Tao ◽  
Xiaomeng Liu ◽  
Feng Xu ◽  
Jie Chang ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
De Novo Assembly ◽  
De Novo ◽  
Matricaria Chamomilla ◽  
Comparative Transcriptome ◽  
Comparative Transcriptome Analysis

scholarly journals De novo assembly and comparative transcriptome analysis of Euglena gracilis in response to anaerobic conditions

BMC Genomics ◽  
2016 ◽  
Vol 17 (1) ◽  
Author(s):  
Yuta Yoshida ◽  
Takuya Tomiyama ◽  
Takanori Maruta ◽  
Masaru Tomita ◽  
Takahiro Ishikawa ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
Euglena Gracilis ◽  
De Novo Assembly ◽  
De Novo ◽  
Comparative Transcriptome ◽  
Anaerobic Conditions ◽  
Comparative Transcriptome Analysis

scholarly journals De novo assembly and comparative transcriptome analysis revealed the genes that were potentially involved in defensive terpenoids emission in the wheat against the wheat aphid Sitobion avenae (Fabricius)

2021 ◽  
Keyword(s):  
Transcriptome Analysis ◽  
Full Text ◽  
De Novo Assembly ◽  
De Novo ◽  
Sitobion Avenae ◽  
Comparative Transcriptome ◽  
Comparative Transcriptome Analysis

Abstract The full text of this preprint has been withdrawn by the authors due to author disagreement with the posting of the preprint. Therefore, the authors do not wish this work to be cited as a reference. Questions should be directed to the corresponding author.

scholarly journals De novo and comparative transcriptome analysis of cultivated and wild spinach

2015 ◽  
Vol 5 (1) ◽  
Author(s):  
Chenxi Xu ◽  
Chen Jiao ◽  
Yi Zheng ◽  
Honghe Sun ◽  
Wenli Liu ◽  
...  
Keyword(s):  
Transcriptome Analysis ◽  
De Novo ◽  
Comparative Transcriptome ◽  
Comparative Transcriptome Analysis

scholarly journals Elucidating biosynthetic pathway of piperine using comparative transcriptome analysis of leaves, root and spike in Piper longum L

2021 ◽  
Author(s):  
Prem Kumar Dantu ◽  
Mrinalini Prasad ◽  
Rajiv Ranjan
Keyword(s):  
Transcriptome Analysis ◽  
Biosynthetic Pathway ◽  
De Novo ◽  
Gene Families ◽  
Comparative Transcriptome ◽  
Illumina Platform ◽  
Piper Longum ◽  
Comparative Transcriptome Analysis ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing

AbstractPiper longum (Pipli; Piperaceae) is an important spice valued for its pungent alkaloids, especially piperine. Albeit, its importance, the mechanism of piperine biosynthesis is still poorly understood. The Next Generation Sequencing (NGS) for P. longum leaves, root and spikes was performed using Illumina platform, which generated 16901456, 54993496 and 22900035, respectively of high quality reads. In de novo assembly P. longum 173381 numbers of transcripts were analyzed. Analysis of transcriptome data from leaf, root and spike showed gene families that were involved in the biosynthetic pathway of piperine and other secondary metabolites. To validate differential expression of the identified genes, 27 genes were randomly selected to confirm the expression level by quantitative real time PCR (qRT-PCR) based on the up regulation and down regulation of differentially expressed genes obtained through comparative transcriptome analysis of leaves and spike of P. longum. With the help of UniProt database the function of all characterized genes was generated.

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