An AFLP Marker Core Subset for the Cultivated Potato Species Solanum phureja ( Solanum tuberosum L. subsp. andigenum)

2021 ◽  
Author(s):  
Alfonso del Rio ◽  
John Bamberg
Keyword(s):  
Solanum Tuberosum ◽  
Aflp Marker ◽  
Solanum Tuberosum L ◽  
Solanum Phureja ◽  
Cultivated Potato ◽  
Potato Species ◽  
Core Subset

scholarly journals Genomic regions of Solanum tuberosum L. associated with the tuber eye depth

2020 ◽  
Vol 24 (5) ◽  
pp. 465-473
Author(s):  
I. V. Totsky ◽  
I. V. Rozanova ◽  
A. D. Safonova ◽  
A. S. Batov ◽  
Yu. A. Gureeva ◽  
...  
Keyword(s):  
Solanum Tuberosum ◽  
Solanum Tuberosum L ◽  
Snp Markers ◽  
Potato Genome ◽  
Potato Species ◽  
Area 5 ◽  
High Level ◽  
Genomic Regions ◽  
Academy Of Sciences ◽  
Eye Depth

Potato (Solanum tuberosum L.) is one of the most important food crops in the world. The genome of this potato species is autotetraploid and has a high level of heterozygosity, also this potato species is a cross-pollinated plant. These characteristics complicate the genetic analysis and breeding process. The tuber’s eye depth is an important trait that affects the suitability of potato varieties for processing. Potato breeding for this trait is based on phenotypic assessment. Identification of the loci that control tuber eye depth would allow diagnostic markers for the marker-assisted selection to be created. The aim of this study is to search for loci associated with the eye depth by analyzing Solanum tuberosum varieties from the GenAgro collection of the Institute of Cytology and Genetics of the Siberian Branch of the Russian Academy of Sciences, genotyped using the Illumina 22K SNP potato array DNA chip. The 24 significant markers associated with the “eye depth” trait were identified using 15,214 SNP markers genotyped with the Illumina 22K SNP potato array chip and the general linear model (GLM) taking into account the population structure. Data obtained showed the presence of SNPs in four genomic regions: on chromosome 4 (1 marker in the 3.92 Mb area), 5 (1 marker in the 4.67 Mb area) and 10 (1 marker in the 4.87 Mb area and 21 markers in the region between 48.1–48.9 Mb). The results of localization in the region 48.1–48.9 Mb of chromosome 10 correspond to previously published studies, the remaining three regions were detected for the first time. DNA sections containing SNPs linked to the tuber’s eye depth were studied in the SolTub_3.0 potato genome assembly (https:// plants.ensembl.org/). KASP markers were developed based on the data obtained. It will be possible to screen the breeding material and to breed the varieties more effectively using current markers associated with a shallow tuber’s eye depth.

Introduction of an amylose-free (amf) mutant into breeding of cultivated potato, Solanum tuberosum L.

Euphytica ◽  
1991 ◽  
Vol 53 (3) ◽  
pp. 247-253 ◽  
Author(s):  
E. Jacobsen ◽  
M. S. Ramanna ◽  
D. J. Huigen ◽  
Z. Sawor
Keyword(s):  
Solanum Tuberosum ◽  
Solanum Tuberosum L ◽  
Cultivated Potato ◽  
Amylose Free

Foliar and tuber assessment of late blight (Phytophthora infestans (Mont.) de Bary) reaction in cultivated potato (Solanum tuberosum L.)

2002 ◽  
Vol 45 (2-4) ◽  
pp. 215-224 ◽  
Author(s):  
D. S. Douches ◽  
W. W. Kirk ◽  
M. A. Bertram ◽  
J. J. Coombs ◽  
B. A. Niemira
Keyword(s):  
Solanum Tuberosum ◽  
Late Blight ◽  
Phytophthora Infestans ◽  
Solanum Tuberosum L ◽  
Cultivated Potato

scholarly journals Detección serológica y molecular del Potato virus X (PVX) en tubérculos-semilla de papa (Solanum tuberosum L. y Solanum phureja Juz. Bukasov) en Antioquia, Colombia

2016 ◽  
Vol 18 (1) ◽  
Author(s):  
Daniela García Ruíz ◽  
Manuel Andrés Olarte Quintero ◽  
Pablo Andrés Gutiérrez Sánchez ◽  
Mauricio Alejandro Marín Montoya
Keyword(s):  
Solanum Tuberosum ◽  
Potato Virus ◽  
Solanum Tuberosum L ◽  
Potato Virus X ◽  
Solanum Phureja ◽  
Das Elisa

<p>El Potato virus (PVX) es uno de los virus más limitantes del cultivo de la papa en el mundo. Es transmitido solamente por contacto y por tubérculo-semilla. Su control se fundamenta en la siembra de tubérculos certificados por su sanidad viral y en la disponibilidad de metodologías de diagnóstico altamente sensibles. En este trabajo se evaluó la prevalencia del PVX en cuatro diferentes tejidos de tubérculos de Solanum tuberosum subsp. andigena var. Diacol-Capiro y S. phureja var. Criolla Colombia utilizando pruebas de DAS-ELISA para 128 submuestras y de RT-qPCR para 32 grupos de submuestras (4 submuestras/grupo). Los resultados de las pruebas serológicas  indicaron la presencia de PVX en el 6,25 y 50% de las submuestras analizadas para la variedad Diacol-Capiro y Criolla Colombia, respectivamente; mientras que los niveles de prevalencia del PVX utilizando la detección por RT-qPCR fueron del 93,75%, independientemente de la variedad de papa y del tejido evaluado. Los valores promedio del ciclo umbral (Ct) en las RT-qPCR fueron de 25,6 (Ct=18,02 a 34,49) y el análisis de las curvas de desnaturalización permitió identificar dos variantes del virus con valores de Tm de 79,5±1°C y 83,7±1°C. La secuenciación de los amplicones obtenidos por RT-qPCR para los controles positivos y para dos de las muestras, confirmó su naturaleza viral. Estos resultados señalan unos muy altos niveles de prevalencia de PVX en el material de siembra de papa en Antioquia y la necesidad de fortalecer los programas de certificación de semilla con pruebas de detección como RT-qPCR.</p>

scholarly journals Molecular marker analysis of 24- and 25-chromosome plants obtained from Solanum tuberosum L. subsp. andigena (2n = 4x = 48) pollinated with a Solanum phureja haploid inducer

Genome ◽  
2002 ◽  
Vol 45 (3) ◽  
pp. 577-583 ◽  
Author(s):  
Y Samitsu ◽  
K Hosaka
Keyword(s):  
Solanum Tuberosum ◽  
Solanum Tuberosum L ◽  
Single Copy ◽  
Solanum Phureja ◽  
Rflp Markers ◽  
Haploid Induction ◽  
Haploid Inducer ◽  
Rflp Rapd ◽  
Molecular Marker Analysis ◽  
Almost All

Clones with 24 or 25 chromosomes were obtained by pollinating an Andean cultivated tetraploid potato (Solanum tuberosum subsp. andigena clone 94H94, 2n = 4x = 48) with the Solanum phureja haploid-inducer clone 1.22. Their genetic composition was analyzed in an RAPD assay using 135 decamer primers and in an RFLP assay using 45 single-copy DNA probes. In total, 22 RAPD and 20 RFLP markers were found to be specific to S. phureja. None of these markers were found in the 24- and 25-chromosome clones. RFLP genotypes for the 45 RFLP loci were further determined for each clone. Genotypes of the 24-chromosome clones were characterized using two alleles randomly selected from four alleles of the parental tetraploid clone for almost all RFLP loci. Five 25-chromosome clones had extra alleles for all of the RFLP loci of chromosomes 4, 8, 10, 11, and 12, respectively, suggesting primary trisomy for one of these chromosomes. Clones with genotypes showing double reduction were also identified. Therefore, the obtained clones likely originated from random samples of female gametes, and hence are euhaploids or aneuhaploids of S. tuberosum subsp. andigena, strongly supporting parthenogenesis to be a primary mechanism for haploid induction in potato.Key words: Solanum tuberosum subsp. andigena, RFLP, RAPD, haploid, trisomic.

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