Genome-scale Modeling of Metabolism and Macromolecular Expression and Their Applications

2020 ◽  
Vol 25 (6) ◽  
pp. 931-943
Author(s):  
Sanjeev Dahal ◽  
Jiao Zhao ◽  
Laurence Yang
Keyword(s):  
2016 ◽  
Vol 2 (3) ◽  
pp. 39-42 ◽  
Author(s):  
Zhaobin Xu ◽  
Nicholas Ribaudo ◽  
Xianhua Li ◽  
Thomas K. Wood ◽  
Zuyi Huang

2020 ◽  
Vol 20 (5) ◽  
Author(s):  
Zhiqiang Wen ◽  
Sufang Zhang ◽  
Chuks Kenneth Odoh ◽  
Mingjie Jin ◽  
Zongbao K Zhao

ABSTRACT The red yeast Rhodosporidium toruloides naturally produces microbial lipids and carotenoids. In the past decade or so, many studies demonstrated R. toruloides as a promising platform for lipid production owing to its diverse substrate appetites, robust stress resistance and other favorable features. Also, significant progresses have been made in genome sequencing, multi-omic analysis and genome-scale modeling, thus illuminating the molecular basis behind its physiology, metabolism and response to environmental stresses. At the same time, genetic parts and tools are continuously being developed to manipulate this distinctive organism. Engineered R. toruloides strains are emerging for enhanced production of conventional lipids, functional lipids as well as other interesting metabolites. This review updates those progresses and highlights future directions for advanced biotechnological applications.


Cell Reports ◽  
2017 ◽  
Vol 21 (11) ◽  
pp. 3040-3048 ◽  
Author(s):  
Alfred K. Ramirez ◽  
Matthew D. Lynes ◽  
Farnaz Shamsi ◽  
Ruidan Xue ◽  
Yu-Hua Tseng ◽  
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PLoS ONE ◽  
2014 ◽  
Vol 9 (11) ◽  
pp. e110380
Author(s):  
Kevin J. Tsai ◽  
Chuan-Hsiung Chang
Keyword(s):  

2012 ◽  
Vol 8 (4) ◽  
pp. e1002460 ◽  
Author(s):  
Trang T. Vu ◽  
Sergey M. Stolyar ◽  
Grigoriy E. Pinchuk ◽  
Eric A. Hill ◽  
Leo A. Kucek ◽  
...  

2012 ◽  
Vol 6 (1) ◽  
pp. 42 ◽  
Author(s):  
Michael J McAnulty ◽  
Jiun Y Yen ◽  
Benjamin G Freedman ◽  
Ryan S Senger

2014 ◽  
Vol 15 (2) ◽  
pp. 130-159 ◽  
Author(s):  
Ali Najafi ◽  
Gholamreza Bidkhori ◽  
Joseph Bozorgmehr ◽  
Ina Koch ◽  
Ali Masoudi-Nejad

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