Isolation and characterization of a novel piezotolerant bacterium Lysinibacillus yapensis sp. nov., from deep-sea sediment of the Yap Trench, Pacific Ocean

2019 ◽  
Vol 57 (7) ◽  
pp. 562-568 ◽  
Author(s):  
Libo Yu ◽  
Xixiang Tang ◽  
Shiping Wei ◽  
Yinkun Qiu ◽  
Xiashutong Xu ◽  
...  
2021 ◽  
Vol 8 ◽  
Author(s):  
Kaveh Purkiani ◽  
Benjamin Gillard ◽  
André Paul ◽  
Matthias Haeckel ◽  
Sabine Haalboom ◽  
...  

Predictability of the dispersion of sediment plumes induced by potential deep-sea mining activities is still very limited due to operational limitations on in-situ observations required for a thorough validation and calibration of numerical models. Here we report on a plume dispersion experiment carried out in the German license area for the exploration of polymetallic nodules in the northeastern tropical Pacific Ocean in 4,200 m water depth. The dispersion of a sediment plume induced by a small-scale dredge experiment in April 2019 was investigated numerically by employing a sediment transport module coupled to a high-resolution hydrodynamic regional ocean model. Various aspects including sediment characteristics and ocean hydrodynamics were examined to obtain the best statistical agreement between sensor-based observations and model results. Results show that the model is capable of reproducing suspended sediment concentration and redeposition patterns observed during the dredge experiment. Due to a strong southward current during the dredging, the model predicts no sediment deposition and plume dispersion north of the dredging tracks. The sediment redeposition thickness reaches up to 9 mm directly next to the dredging tracks and 0.07 mm in about 320 m away from the dredging center. The model results suggest that seabed topography and variable sediment release heights above the seafloor cause significant changes especially for the low sedimentation pattern in the far-field area. Near-bottom mixing is expected to strongly influence vertical transport of suspended sediment.


2019 ◽  
Vol 113 (3) ◽  
pp. 389-396 ◽  
Author(s):  
Xiashutong Xu ◽  
Libo Yu ◽  
Guangxin Xu ◽  
Qilin Wang ◽  
Shiping Wei ◽  
...  

2003 ◽  
Vol 69 (5) ◽  
pp. 2906-2913 ◽  
Author(s):  
K. J. Edwards ◽  
D. R. Rogers ◽  
C. O. Wirsen ◽  
T. M. McCollom

ABSTRACT We report the isolation and physiological characterization of novel, psychrophilic, iron-oxidizing bacteria (FeOB) from low-temperature weathering habitats in the vicinity of the Juan de Fuca deep-sea hydrothermal area. The FeOB were cultured from the surfaces of weathered rock and metalliferous sediments. They are capable of growth on a variety of natural and synthetic solid rock and mineral substrates, such as pyrite (FeS2), basalt glass (∼10 wt% FeO), and siderite (FeCO3), as their sole energy source, as well as numerous aqueous Fe substrates. Growth temperature characteristics correspond to the in situ environmental conditions of sample origin; the FeOB grow optimally at 3 to 10°C and at generation times ranging from 57 to 74 h. They are obligate chemolithoautotrophs and grow optimally under microaerobic conditions in the presence of an oxygen gradient or anaerobically in the presence of nitrate. None of the strains are capable of using any organic or alternate inorganic substrates tested. The bacteria are phylogenetically diverse and have no close Fe-oxidizing or autotrophic relatives represented in pure culture. One group of isolates are γ-Proteobacteria most closely related to the heterotrophic bacterium Marinobacter aquaeolei (87 to 94% sequence similarity). A second group of isolates are α-Proteobacteria most closely related to the deep-sea heterotrophic bacterium Hyphomonas jannaschiana (81 to 89% sequence similarity). This study provides further evidence for the evolutionarily widespread capacity for Fe oxidation among bacteria and suggests that FeOB may play an unrecognized geomicrobiological role in rock weathering in the deep sea.


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