scholarly journals Sequence-based approach for rapid identification of cross-clade CD8+ T-cell vaccine candidates from all high-risk HPV strains

3 Biotech ◽  
2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Krishna P. Singh ◽  
Neeraj Verma ◽  
Bashir A. Akhoon ◽  
Vishal Bhatt ◽  
Shishir K. Gupta ◽  
...  
2017 ◽  
Vol 10 (9) ◽  
pp. a028910 ◽  
Author(s):  
Lalit K. Beura ◽  
Stephen C. Jameson ◽  
David Masopust

Vaccine ◽  
2010 ◽  
Vol 29 (2) ◽  
pp. 314-322 ◽  
Author(s):  
Alina C. Boesteanu ◽  
Nadarajan S. Babu ◽  
Margaret Wheatley ◽  
Elisabeth S. Papazoglou ◽  
Peter D. Katsikis

Author(s):  
Ed McGowan ◽  
Rachel Rosenthal ◽  
Andrew Fiore-Gartland ◽  
Gladys Macharia ◽  
Sheila Balinda ◽  
...  

ABSTRACTPredictive models are becoming more and more commonplace as tools for candidate antigen discovery to meet the challenges of enabling epitope mapping of cohorts with diverse HLA properties. Here we build on the concept of using two key parameters, diversity metric of the HLA profile of individuals within a population and consideration of sequence diversity in the context of an individual’s CD8 T-cell immune repertoire to assess the HIV proteome for defined regions of immunogenicity. Using this approach, Analysis of HLA adaptation and functional immunogenicity data enabled the identification of regions within the proteome that offer significant conservation, HLA recognition within a population, low prevalence of HLA adaptation and demonstrated immunogenicity. We believe this unique and novel approach to vaccine design that, in combination with in vitro functional assays, offers a bespoke pipeline for expedited and rational CD8 T-cell vaccine design for HIV and potentially other pathogens with the potential for both global and local coverage.


Author(s):  
CV Herst ◽  
S Burkholz ◽  
J Sidney ◽  
A Sette ◽  
PE Harris ◽  
...  

AbstractThe 2013-2016 West Africa EBOV epidemic was the biggest EBOV outbreak to date. An analysis of virus-specific CD8+ T-cell immunity in 30 survivors showed that 26 of those individuals had a CD8+ response to at least one EBOV protein. The dominant response (25/26 subjects) was specific to the EBOV nucleocapsid protein (NP). It has been suggested that epitopes on the EBOV NP could form an important part of an effective T-cell vaccine for Ebola Zaire. We show that a 9-amino-acid peptide NP44-52 (YQVNNLEEI) located in a conserved region of EBOV NP provides protection against morbidity and mortality after mouse adapted EBOV challenge. A single vaccination in a C57BL/6 mouse using an adjuvanted microsphere peptide vaccine formulation containing NP44-52 is enough to confer immunity in mice. Our work suggests that a peptide vaccine based on CD8+ T-cell immunity in EBOV survivors is conceptually sound and feasible. Nucleocapsid proteins within SARS-CoV-2 contain multiple class I epitopes with predicted HLA restrictions consistent with broad population coverage. A similar approach to a CTL vaccine design may be possible for that virus.


2008 ◽  
Vol 24 (14) ◽  
pp. 1639-1640 ◽  
Author(s):  
James Thurmond ◽  
Hyejin Yoon ◽  
Carla Kuiken ◽  
Karina Yusim ◽  
Simon Perkins ◽  
...  

2021 ◽  
Vol 9 (Suppl 3) ◽  
pp. A106-A106
Author(s):  
David Langan ◽  
Jourdain Lemaster ◽  
Lauren Suarez ◽  
Pratima Kunwar ◽  
Sojung Kim ◽  
...  

BackgroundNexImmune is developing highly differentiated immunotherapies to target, activate and expand tumor antigen-specific T cells using the proprietary Artificial Immune Modulation (AIM™) nanotechnology platform. The AIM nanoparticle (AIM-np) technology functions as synthetic dendritic cells capable of directing a specific T cell-mediated immune response. By mimicking natural T cell biology, NexImmune’s cellular therapy product candidates (AIM ACT) are designed to combine the attributes of cellular precision, potency, and persistence with reduced potential for undesired toxicities. Human papilloma virus (HPV) is responsible for >45,000 cancers yearly in the United States, according to the CDC. From 2013–2017 an estimate 79% of cervical, vulva, penis, vaginal, anus, and oropharyngeal cancers were attributed to HPV and of these about 80% were associated with high-risk HPV types 16 and 18. Although multivalent vaccines against high-risk HPV infections exist, significant clinical challenges remain. A limited vaccination rate means many remain vulnerable and vaccination does not treat pre-existing HPV infections or malignancies.MethodsTherefore, NexImmune is employing its AIM-np technology to generate an adoptive cell therapy (ACT) using its proprietary enrichment and expansion (E+E) ex vivo process to expand clinically relevant numbers of CD8+ T cells that recognize the HPV16 and HPV18 oncogenic antigens (i.e., E6 and E7) expressed by malignant cells of head and neck, cervical, and anal cancers. Using the Immune Epitope Database and Analysis Resource (IEDB), 44 HLA-A2 restricted peptides were identified as potential immunogenic targets for preclinical screening. Using PBMCs from healthy donor-derived apheresis material, different combinations of these peptides were used in the E+E process to expand HPV-cancer specific CD8+ T cells.ResultsAfter multiple E+E experiments were concluded, 5 peptides were identified that consistently elicited the strongest T cell responses. Furthermore, these CD8+ T cells were predominantly from the central memory (CD62L+CD45RA-) and effector memory (CD62L-CD45RA-) phenotype (sum total 82.18 ± 8.29 [Mean ± SEM]) suggesting their in vivo functionality and persistence will combine anti-tumor activity with long-term immunologic memory.ConclusionsA similar E+E screening is being conducted with PBMCs isolated from HPV+ cancer patients. A comparison of the CD8+ T cell responses from healthy donor and cancer patient cells will provide critical preclinical data to support a planned FIH trial for HPV-associated malignancies. The current study demonstrates the ability for high-throughput peptide screening to identify clinically relevant peptide cocktails capable of expanding multi-antigen tumor-specific CD8+ T cell populations within 2 weeks.


2021 ◽  
Vol 1 ◽  
Author(s):  
Jonathan Hare ◽  
David Morrison ◽  
Morten Nielsen

Predictive models for vaccine design have become a powerful and necessary resource for the expeditiousness design of vaccines to combat the ongoing SARS-CoV-2 global pandemic. Here we use the power of these predicted models to assess the sequence diversity of circulating SARS-CoV-2 proteomes in the context of an individual’s CD8 T-cell immune repertoire to identify potential. defined regions of immunogenicity. Using this approach of expedited and rational CD8 T-cell vaccine design, it may be possible to develop a therapeutic vaccine candidate with the potential for both global and local coverage.


Vaccine ◽  
2015 ◽  
Vol 33 (32) ◽  
pp. 3865-3872 ◽  
Author(s):  
Hugh I. McFarland ◽  
Julia D. Berkson ◽  
Jay P. Lee ◽  
Abdel G. Elkahloun ◽  
Karen P. Mason ◽  
...  

2014 ◽  
Vol 30 (S1) ◽  
pp. A187-A187 ◽  
Author(s):  
Nicola J. Borthwick ◽  
Tina Ahmed ◽  
Lucy Dorrell ◽  
Andy Van Hateren ◽  
Tim Elliot ◽  
...  

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