16S Genomics for Diagnosing Invasive Bacterial Infection

Author(s):  
Filipa F. Vale ◽  
Luís Tanoeiro ◽  
Andreia T. Marques
PEDIATRICS ◽  
1995 ◽  
Vol 96 (5) ◽  
pp. 951-954
Author(s):  
Penny M. Adcock ◽  
Ronald I. Paul ◽  
Gary S. Marshall

Background. Identifying febrile children with invasive bacterial infection is difficult in the absence of telltale physical findings. Urine latex agglutination (ULA) tests have been used for rapid, on-site identification of such children. Objectives. To study the performance of ULA tests in identifying children with Haemophilus influenzae, Streptococcus pneumoniae, and group B streptococcus infection and to examine how the results of ULA tests affect patient treatment. Design. Retrospective review. Setting. Urban children's hospital. Patients. All emergency department and hospital patients tested by ULA in 1990, excluding patients in the neonatal units. Results. Of 1629 patients, 36 had positive tests (20 H influenzae, 5 S pneumoniae, and 11 group B streptococcus). Thirteen of these were false positive based on culture results. Although ULA tests demonstrated excellent specificity, their sensitivity was poor. Positive predictive values for bacteremia ranged from 0.346 to 0.600, and negative predictive values ranged from 0.972 to 0.997. The decision to treat with antibiotics was made before ULA test results were available in 19 (53%) of the 36 patients with positive test results. Of 1593 patients with negative test results, 1211 (76%) were admitted to the hospital, and approximately 81% were empirically treated with parenteral antibiotics. Conclusions. In clinical practice, treatment and disposition decisions are frequently made without regard to ULA test results.


Author(s):  
Belgin Gülhan ◽  
Saliha Kanık Yüksek ◽  
Aslınur Özkaya Parlakay ◽  
Neşe Yaralı ◽  
Namık Yaşar Özbek ◽  
...  

2020 ◽  
Vol 71 (Supplement_2) ◽  
pp. S130-S140
Author(s):  
William L Still ◽  
Milagritos D Tapia ◽  
Sharon M Tennant ◽  
Mamadou Sylla ◽  
Aliou Touré ◽  
...  

Abstract Background Salmonella enterica bloodstream infections are an important cause of childhood morbidity and mortality, including in Mali. We report 17 years of surveillance for nontyphoidal and typhoidal S. enterica infections among inpatients and outpatients at l’Hôpital Gabriel Touré, the main source of pediatric tertiary care in Bamako, Mali. Methods Between June 2002 and December 2018, a blood culture was collected from 54 748 children aged ≤15 years with fever and/or suspected invasive bacterial infection who provided consent (38 152 inpatients, 16 596 outpatients). Bacterial pathogens were identified using standard microbiological techniques and serovars of S. enterica were determined by PCR and/or agglutination with antisera. Results Nontyphoidal Salmonella (NTS) was identified in 671 enrolled inpatients (1.8% of all enrolled inpatients, 13.8% of enrolled inpatients with a positive culture). S. Enteritidis, the most common NTS serovar, accounted for 38.5% of all NTS isolates (n = 258), followed by S. Typhimurium (31.7%, n = 213). The median (SD) age of children with a culture positive for NTS was 1.8 (3) years. Overall case fatality was 20.9%. An additional 138 inpatients (0.4%) had a positive culture for typhoidal Salmonella. NTS was identified in 11 outpatients (0.07%), while typhoidal Salmonella was found in 49 outpatients (0.3%). The annual incidence of invasive NTS disease decreased over the study period, but case fatality remained high. Conclusions Although incidence decreased, NTS remained a major cause of invasive bacterial infection and mortality among hospitalized children in Bamako, while typhoidal Salmonella was uncommon. Because 87% of NTS belonged to only 4 serovars, a multivalent vaccine may be an effective strategy to reduce the burden and mortality of invasive NTS.


2006 ◽  
Vol 12 (6) ◽  
pp. 636-641 ◽  
Author(s):  
Milan Chromek ◽  
Zuzana Slamová ◽  
Peter Bergman ◽  
László Kovács ◽  
L'udmila Podracká ◽  
...  

1987 ◽  
Vol 21 (4) ◽  
pp. 202A-202A
Author(s):  
Robert K Kanter ◽  
Leonard B Weiner ◽  
Gloria A Albarelli ◽  
Joy M Tompkins ◽  
Roger E Spitzer

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