scholarly journals Host genetic effects in pneumonia

2021 ◽  
Vol 108 (1) ◽  
pp. 194-201
Author(s):  
Hung-Hsin Chen ◽  
Douglas M. Shaw ◽  
Lauren E. Petty ◽  
Misa Graff ◽  
Ryan J. Bohlender ◽  
...  
Keyword(s):  
Science ◽  
2021 ◽  
Vol 373 (6551) ◽  
pp. 181-186 ◽  
Author(s):  
Laura Grieneisen ◽  
Mauna Dasari ◽  
Trevor J. Gould ◽  
Johannes R. Björk ◽  
Jean-Christophe Grenier ◽  
...  

Relatives have more similar gut microbiomes than nonrelatives, but the degree to which this similarity results from shared genotypes versus shared environments has been controversial. Here, we leveraged 16,234 gut microbiome profiles, collected over 14 years from 585 wild baboons, to reveal that host genetic effects on the gut microbiome are nearly universal. Controlling for diet, age, and socioecological variation, 97% of microbiome phenotypes were significantly heritable, including several reported as heritable in humans. Heritability was typically low (mean = 0.068) but was systematically greater in the dry season, with low diet diversity, and in older hosts. We show that longitudinal profiles and large sample sizes are crucial to quantifying microbiome heritability, and indicate scope for selection on microbiome characteristics as a host phenotype.


2020 ◽  
Vol 7 (4) ◽  
Author(s):  
Huimin Zhong ◽  
Matthew J Magee ◽  
Yunfeng Huang ◽  
Qin Hui ◽  
Marta Gwinn ◽  
...  

Abstract Background Understanding the link between tuberculosis (TB) and diabetes is increasingly important as public health responds to the growing global burden of noncommunicable diseases. Genetic association studies have identified numerous host genetic variants linked to TB; however, potential host genetic mechanisms linking TB and diabetes remain unexplored. Methods We used genetic and phenotypic data from the UK Biobank to evaluate the association of 6 previously reported TB-related host genetic variants (genome-wide significant associations from published studies) with diabetes. The study included 409 692 adults of European ancestry including 2177 with type 1 diabetes mellitus (T1DM) and 13 976 with type 2 diabetes mellitus (T2DM), defined by ICD-10 diagnosis codes. Results Of the 6 TB-associated single nucleotide polymorphisms (SNPs), 2 were associated with T1DM and 3 with T2DM, after adjusting for age, sex, body mass index, smoking, alcohol use, and population structure. After correction for multiple testing, SNPs rs2894257 and rs3135359 (HLA-DRA-DQA1) were associated with T1DM (rs2894257: odds ratio [OR], 1.32; 95% confidence interval [CI], 1.21–1.45; rs3135359: OR, 1.72; 95% CI, 1.57–1.88) and T2DM (rs2894257: OR, 1.11; 95% CI, 1.08–1.15; rs3135359: OR, 1.06; 95% CI, 1.025–1.096). The associations with T2DM weakened for rs2894257 and rs3135359 after further exclusion of probable T1DM cases defined by International Statistical Classification of Diseases and Related Health Problems (ICD-10) codes. SNP rs4733781 on chromosome 8 (ASAP1 gene) was associated with T2DM after exclusion of T1DM cases. Conclusions Our findings suggest that common host genetic effects may play a role in the molecular mechanism linking TB and diabetes. Future large genetic studies of TB and diabetes should focus on developing countries with high burdens of infectious and chronic diseases.


Genetics ◽  
2015 ◽  
Vol 201 (3) ◽  
pp. 871-884 ◽  
Author(s):  
Osvaldo Anacleto ◽  
Luis Alberto Garcia-Cortés ◽  
Debby Lipschutz-Powell ◽  
John A. Woolliams ◽  
Andrea B. Doeschl-Wilson

Diabetes ◽  
2018 ◽  
Vol 67 (Supplement 1) ◽  
pp. 1706-P ◽  
Author(s):  
ARUSHI VARSHNEY ◽  
STEPHEN PARKER ◽  

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