scholarly journals Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies

2007 ◽  
Vol 39 (3) ◽  
pp. 183-195 ◽  
Author(s):  
Olivier Bodenreider ◽  
Barry Smith ◽  
Anand Kumar ◽  
Anita Burgun
Keyword(s):  
2014 ◽  
Vol 22 (3) ◽  
pp. 628-639 ◽  
Author(s):  
Christopher Ochs ◽  
James Geller ◽  
Yehoshua Perl ◽  
Yan Chen ◽  
Ankur Agrawal ◽  
...  

Abstract Objective Large and complex terminologies, such as Systematized Nomenclature of Medicine–Clinical Terms (SNOMED CT), are prone to errors and inconsistencies. Abstraction networks are compact summarizations of the content and structure of a terminology. Abstraction networks have been shown to support terminology quality assurance. In this paper, we introduce an abstraction network derivation methodology which can be applied to SNOMED CT target hierarchies whose classes are defined using only hierarchical relationships (ie, without attribute relationships) and similar description-logic-based terminologies. Methods We introduce the tribal abstraction network (TAN), based on the notion of a tribe—a subhierarchy rooted at a child of a hierarchy root, assuming only the existence of concepts with multiple parents. The TAN summarizes a hierarchy that does not have attribute relationships using sets of concepts, called tribal units that belong to exactly the same multiple tribes. Tribal units are further divided into refined tribal units which contain closely related concepts. A quality assurance methodology that utilizes TAN summarizations is introduced. Results A TAN is derived for the Observable entity hierarchy of SNOMED CT, summarizing its content. A TAN-based quality assurance review of the concepts of the hierarchy is performed, and erroneous concepts are shown to appear more frequently in large refined tribal units than in small refined tribal units. Furthermore, more erroneous concepts appear in large refined tribal units of more tribes than of fewer tribes. Conclusions In this paper we introduce the TAN for summarizing SNOMED CT target hierarchies. A TAN was derived for the Observable entity hierarchy of SNOMED CT. A quality assurance methodology utilizing the TAN was introduced and demonstrated.


Author(s):  
Suwan Tongphu

<p>A similarity measure is one classical problem in Description Logic which aims at identifying the similarity between concepts in an ontology. Finding a hierarchy distance among concepts in an ontology is one popular technique. However, one major drawback of such a technique is that it usually ignores a concept definition analysis. This work introduces a new method for similarity measure. The proposed system semantically analyzes structures of two concept descriptions and then computes the similarity score based on the number of shared features. The efficiency of the proposed algorithm is measured by means of the satisfaction of desirable properties and intensive experiments on the Snomed ct ontology.</p>


2012 ◽  
Vol 44 ◽  
pp. 633-708 ◽  
Author(s):  
B. Konev ◽  
M. Ludwig ◽  
D. Walther ◽  
F. Wolter

We study a logic-based approach to versioning of ontologies. Under this view, ontologies provide answers to queries about some vocabulary of interest. The difference between two versions of an ontology is given by the set of queries that receive different answers. We investigate this approach for terminologies given in the description logic EL extended with role inclusions and domain and range restrictions for three distinct types of queries: subsumption, instance, and conjunctive queries. In all three cases, we present polynomial-time algorithms that decide whether two terminologies give the same answers to queries over a given vocabulary and compute a succinct representation of the difference if it is non- empty. We present an implementation, CEX2, of the developed algorithms for subsumption and instance queries and apply it to distinct versions of Snomed CT and the NCI ontology.


Author(s):  
Boontawee Suntisrivaraporn ◽  
Franz Baader ◽  
Stefan Schulz ◽  
Kent Spackman
Keyword(s):  

2019 ◽  
Vol 46 (3) ◽  
pp. 187-198 ◽  
Author(s):  
Debashis Naskar ◽  
Subhashis Das

The purpose of this research is to develop an ontology with subsequent testing and evaluation, for identifying utility and value. The domain that has been chosen is human nervous system (HNS) disorders. It is hypothesized here that an ontology-based patient records management system is more effective in meeting and addressing complex information needs of health-care personnel. Therefore, this study has been based on the premise that developing an ontology and using it as a component of the search interface in hospital records management systems will lead to more efficient and effective management of health-care. It is proposed here to develop an ontology of the domain of HNS disorders using a standard vocabulary such as MeSH or SNOMED CT. The principal classes of an ontology include facet analysis for arranging concepts based on their common characteristics to build mutually exclusive classes. We combine faceted theory with description logic, which helps us to better query and retrieve data by implementing an ontological model. Protégé 5.2.0 was used as ontology editor. The use of ontologies for domain modelling will be of acute help to doctors for searching patient records. In this paper we show how the faceted approach helps us to build a flexible model and retrieve better information. We use the medical domain as a case study to show examples and implementation.


2021 ◽  
pp. 194-201
Author(s):  
Alexander K. Goel ◽  
Walter Scott Campbell ◽  
Richard Moldwin

Lack of interoperability is one of the greatest challenges facing healthcare informatics. Recent interoperability efforts have focused primarily on data transmission and generally ignore data capture standardization. Structured Data Capture (SDC) is an open-source technical framework that enables the capture and exchange of standardized and structured data in interoperable data entry forms (DEFs) at the point of care. Some of SDC’s primary use cases concern complex oncology data such as anatomic pathology, biomarkers, and clinical oncology data collection and reporting. Its interoperability goals are the preservation of semantic, contextual, and structural integrity of the captured data throughout the data’s lifespan. SDC documents are written in eXtensible Markup Language (XML) and are therefore computer readable, yet technology agnostic—SDC can be implemented by any EHR vendor or registry. Any SDC-capable system can render an SDC XML file into a DEF, receive and parse an SDC transmission, and regenerate the original SDC form as a DEF or synoptic report with the response data intact. SDC is therefore able to facilitate interoperable data capture and exchange for patient care, clinical trials, cancer surveillance and public health needs, clinical research, and computable care guidelines. The usability of SDC-captured oncology data is enhanced when the SDC data elements are mapped to standard terminologies. For example, an SDC map to Systematized Nomenclature of Medicine Clinical Terms (SNOMED CT) enables aggregation of SDC data with other related data sets and permits advanced queries and groupings on the basis of SNOMED CT concept attributes and description logic. SDC supports terminology maps using separate map files or as terminology codes embedded in an SDC document.


2020 ◽  
Vol 25 (04) ◽  
pp. 9-9
Keyword(s):  

Das Bundesforschungsministerium hat eine Pilotlizenz für den internationalen Terminologiestandard SNOMED CT erworben.


2012 ◽  
Vol 35 (4) ◽  
pp. 767-785
Author(s):  
Jing-Wei CHENG ◽  
Zong-Min MA ◽  
Li YAN ◽  
Fu ZHANG

2013 ◽  
Vol 33 (1) ◽  
pp. 266-269 ◽  
Author(s):  
Ming LI ◽  
Shiyi LIU ◽  
Fuzhong NIAN

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