scholarly journals Directed Evolution of Epoxide Hydrolase from A. radiobacter toward Higher Enantioselectivity by Error-Prone PCR and DNA Shuffling

2004 ◽  
Vol 11 (7) ◽  
pp. 981-990 ◽  
Author(s):  
Bert van Loo ◽  
Jeffrey H.Lutje Spelberg ◽  
Jaap Kingma ◽  
Theo Sonke ◽  
Marcel G Wubbolts ◽  
...  
ChemCatChem ◽  
2010 ◽  
Vol 2 (8) ◽  
pp. 958-961 ◽  
Author(s):  
Huabao Zheng ◽  
Daniel Kahakeaw ◽  
Juan Pablo Acevedo ◽  
Manfred T. Reetz

Author(s):  
Janina Speck ◽  
Sabine C. Stebel ◽  
Katja M. Arndt ◽  
Kristian M. Müller

2004 ◽  
Vol 6 (2) ◽  
pp. 177-180 ◽  
Author(s):  
Manfred T. Reetz ◽  
Claudia Torre ◽  
Andreas Eipper ◽  
Renate Lohmer ◽  
Marcus Hermes ◽  
...  

2007 ◽  
Vol 388 (12) ◽  
pp. 1291-1300 ◽  
Author(s):  
Ai-Sheng Xiong ◽  
Ri-He Peng ◽  
Jing Zhuang ◽  
Jin-Ge Liu ◽  
Feng Gao ◽  
...  

Abstract Directed evolution in vitro is a powerful molecular tool for the creation of new biological phenotypes. It is unclear whether it is more efficient to mutate an enzyme randomly or to mutate just the active sites or key sites. In this study, the strategy of a semi-rational design of directed evolution combined with whole sequence and sites was developed. The 1553 bp gene encoding the thermostable β-galactosidase of Pyrococcus woesei was chemically synthesized and optimized for G+C content and mRNA secondary structures. The synthesized gene product was used as a template or as a wild-type control. On the basis of the first round of DNA shuffling, library construction and screening, one mutant of YH6754 was isolated with higher activity. Eight potential key sites were deduced from the sequence of the shuffled gene, and 16 degenerate oligonucleotides were designed according to those eight amino acids. Two variants of YG6765 and YG8252 were screened in the second part of DNA shuffling, library construction and screening. For comparison, one mutant of YH8757 was screened through the same routine rounds of directed evolution with YH6754 as template. The purified β-galactosidase from YH8757 exhibited a lower specific activity at 25°C than those purified from mutated YG6755 and YG8252.


2003 ◽  
Vol 21 (6) ◽  
pp. 357-364 ◽  
Author(s):  
Frederic Cedrone ◽  
Sebastien Niel ◽  
Sanja Roca ◽  
Tej Bhatnagar ◽  
Nadra Ait-abdelkader ◽  
...  

2005 ◽  
Vol 71 (7) ◽  
pp. 3995-4003 ◽  
Author(s):  
Lingyun Rui ◽  
Li Cao ◽  
Wilfred Chen ◽  
Kenneth F. Reardon ◽  
Thomas K. Wood

ABSTRACT DNA shuffling and saturation mutagenesis of positions F108, L190, I219, D235, and C248 were used to generate variants of the epoxide hydrolase of Agrobacterium radiobacter AD1 (EchA) with enhanced enantioselectivity and activity for styrene oxide and enhanced activity for 1,2-epoxyhexane and epoxypropane. EchA variant I219F has more than fivefold-enhanced enantioselectivity toward racemic styrene oxide, with the enantiomeric ratio value (E value) for the production of (R)-1-phenylethane-1,2-diol increased from 17 for the wild-type enzyme to 91, as well as twofold-improved activity for the production of (R)-1-phenylethane-1,2-diol (1.96 ± 0.09 versus 1.04 ± 0.07 μmol/min/mg for wild-type EchA). Computer modeling indicated that this mutation significantly alters (R)-styrene oxide binding in the active site. Another three variants from EchA active-site engineering, F108L/C248I, I219L/C248I, and F108L/I219L/C248I, also exhibited improved enantioselectivity toward racemic styrene oxide in favor of production of the corresponding diol in the (R) configuration (twofold enhancement in their E values). Variant F108L/I219L/C248I also demonstrated 10-fold- and 2-fold-increased activity on 5 mM epoxypropane (24 ± 2 versus 2.4 ± 0.3 μmol/min/mg for the wild-type enzyme) and 5 mM 1,2-epoxyhexane (5.2 ± 0.5 versus 2.6 ± 0.0 μmol/min/mg for the wild-type enzyme). Both variants L190F (isolated from a DNA shuffling library) and L190Y (created from subsequent saturation mutagenesis) showed significantly enhanced activity for racemic styrene oxide hydrolysis, with 4.8-fold (8.6 ± 0.3 versus 1.8 ± 0.2 μmol/min/mg for the wild-type enzyme) and 2.7-fold (4.8 ± 0.8 versus 1.8 ± 0.2 μmol/min/mg for the wild-type enzyme) improvements, respectively. L190Y also hydrolyzed 1,2-epoxyhexane 2.5 times faster than the wild-type enzyme.


ACS Catalysis ◽  
2016 ◽  
Vol 6 (6) ◽  
pp. 3679-3687 ◽  
Author(s):  
Guangyue Li ◽  
Hui Zhang ◽  
Zhoutong Sun ◽  
Xinqi Liu ◽  
Manfred T. Reetz

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