Machine learning of ab-initio energy landscapes for crystal structure predictions

2019 ◽  
Vol 158 ◽  
pp. 414-419 ◽  
Author(s):  
Shreyas Honrao ◽  
Bryan E. Anthonio ◽  
Rohit Ramanathan ◽  
Joshua J. Gabriel ◽  
Richard G. Hennig
2019 ◽  
Author(s):  
Jack Yang ◽  
Nathan Li ◽  
Sean Li

The ability to perform large-scale crystal structure predictions (CSP) have significantly advanced the synthesis of functional molecular solids by designs. In our recent work [Chem. Mater., 30, 4361 (2018)], we demonstrated our latest developments in organic CSPs by screening a set of 28 pyrrole azaphenacene isomers which led to one new molecule with higher thermodynamic stability and carrier mobilities in its crystalline form, compared to the one reported experimentally. Hereby, using the lattice energy landscapes for pyrrole azaphenacenes as examples, we applied machine-learning techniques to statistically reveal in more details, on how molecular symmetry and Z' values translate to the crystal packing landscapes, which in terms affect the coverage of landscape through quasi-random crystal structure samplings. A recurring theme in crystal engineering is to identify the probabilities of targeting isostructures to a specific reference crystal upon chemical functionalisations. For this, we propose here a global similarity index in conjunction with the Energy-Density Isostructurality (EDI) map to analyse the lattice energy landscapes for halogen substituted pyrrole azaphenacenes. A continue effort in the field is to accelerate CSPs for sampling a much wider chemical space for high-throughput material screenings, we propose a potential solution to this challenge drawn upon this study. Our work will hopefully stimulate the crystal engineering community in adapting a more statistically-oriented approach in understanding crystal packing of organic molecules in the age of digitisation.


2019 ◽  
Author(s):  
Jack Yang ◽  
Nathan Li ◽  
Sean Li

The ability to perform large-scale crystal structure predictions (CSP) have significantly advanced the synthesis of functional molecular solids by designs. In our recent work [Chem. Mater., 30, 4361 (2018)], we demonstrated our latest developments in organic CSPs by screening a set of 28 pyrrole azaphenacene isomers which led to one new molecule with higher thermodynamic stability and carrier mobilities in its crystalline form, compared to the one reported experimentally. Hereby, using the lattice energy landscapes for pyrrole azaphenacenes as examples, we applied machine-learning techniques to statistically reveal in more details, on how molecular symmetry and Z' values translate to the crystal packing landscapes, which in terms affect the coverage of landscape through quasi-random crystal structure samplings. A recurring theme in crystal engineering is to identify the probabilities of targeting isostructures to a specific reference crystal upon chemical functionalisations. For this, we propose here a global similarity index in conjunction with the Energy-Density Isostructurality (EDI) map to analyse the lattice energy landscapes for halogen substituted pyrrole azaphenacenes. A continue effort in the field is to accelerate CSPs for sampling a much wider chemical space for high-throughput material screenings, we propose a potential solution to this challenge drawn upon this study. Our work will hopefully stimulate the crystal engineering community in adapting a more statistically-oriented approach in understanding crystal packing of organic molecules in the age of digitisation.


2018 ◽  
Vol 211 ◽  
pp. 45-59 ◽  
Author(s):  
Volker L. Deringer ◽  
Davide M. Proserpio ◽  
Gábor Csányi ◽  
Chris J. Pickard

Machine learning-based interatomic potentials, fitting energy landscapes “on the fly”, are emerging and promising tools for crystal structure prediction.


RSC Advances ◽  
2019 ◽  
Vol 9 (7) ◽  
pp. 3577-3581 ◽  
Author(s):  
Nursultan Sagatov ◽  
Pavel N. Gavryushkin ◽  
Talgat M. Inerbaev ◽  
Konstantin D. Litasov

We carried out ab initio calculations on the crystal structure prediction and determination of P–T diagrams within the quasi-harmonic approximation for Fe7N3 and Fe7C3.


2021 ◽  
pp. 102579
Author(s):  
Shilpa Singh ◽  
Yogesh Sonvane ◽  
K.A. Nekrasov ◽  
A.S. Boyarchenkov ◽  
A. Ya. Kupryazhkin ◽  
...  

2002 ◽  
Vol 58 (3) ◽  
pp. 349-357 ◽  
Author(s):  
Yvon Le Page ◽  
Paul W. Saxe ◽  
John R. Rodgers

The timely integration of crystal structure databases, such as CRYSTMET, ICSD etc., with quantum software, like VASP, OresteS, ElectrA etc., allows ab initio cell and structure optimization on existing pure-phase compounds to be performed seamlessly with just a few mouse clicks. Application to the optimization of rough structure models, and possibly new atomic arrangements, is detailed. The ability to reproduce observed cell data can lead to an assessment of the intrinsic plausibility of a structure model, even without a competing model. The accuracy of optimized atom positions is analogous to that from routine powder studies. Recently, the ab initio symmetry-general least-squares extraction of the coefficients of the elastic tensor for pure-phase materials using data from corresponding entries in crystal structure databases was automated. A selection of highly encouraging results is presented, stressing the complementarity of simulation and experiment. Additional physical properties also appear to be computable using existing quantum software under the guidance of an automation scheme designed following the above automation for the elastic tensor. This possibility creates the exciting perspective of mining crystal structure databases for new materials with combinations of physical properties that were never measured before. Crystal structure databases can accordingly be expected to become the cornerstone of materials science research within a very few years, adding immense practical value to the archived structure data.


2005 ◽  
Vol 38 (2) ◽  
pp. 381-388 ◽  
Author(s):  
Maria C. Burla ◽  
Rocco Caliandro ◽  
Mercedes Camalli ◽  
Benedetta Carrozzini ◽  
Giovanni L. Cascarano ◽  
...  

SIR2004is the evolution of theSIR2002program [Burla, Camalli, Carrozzini, Cascarano, Giacovazzo, Polidori & Spagna (2003).J. Appl. Cryst.36, 1103]. It is devoted to the solution of crystal structures by direct and Patterson methods. Several new features implemented inSIR2004make this program efficient: it is able to solveab initioboth small/medium-size structures as well as macromolecules (up to 2000 atoms in the asymmetric unit). In favourable circumstances, the program is also able to solve protein structures with data resolution up to 1.4–1.5 Å, and to provide interpretable electron density maps. A powerful user-friendly graphical interface is provided.


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