A QM/MM study combined with the theory of energy representation: Solvation free energies for anti/syn acetic acids in aqueous solution

2006 ◽  
Vol 419 (1-3) ◽  
pp. 240-244 ◽  
Author(s):  
Takumi Hori ◽  
Hideaki Takahashi ◽  
Masayoshi Nakano ◽  
Tomoshige Nitta ◽  
Weitao Yang
Keyword(s):  
Aqueous Solution ◽  
Free Energies ◽  
Solvation Free Energies ◽  
Acetic Acids

2-Deoxyribose Radicals in the Gas Phase and Aqueous Solution. Transient Intermediates of Hydrogen Atom Abstraction from 2-Deoxyribofuranose

2005 ◽  
Vol 70 (11) ◽  
pp. 1769-1786 ◽  
Author(s):  
Luc A. Vannier ◽  
Chunxiang Yao ◽  
František Tureček
Keyword(s):  
Aqueous Solution ◽  
Hydrogen Atom ◽  
Gas Phase ◽  
Computational Study ◽  
Hydrogen Atom Abstraction ◽  
Oh Radical ◽  
Free Energies ◽  
Intramolecular Hydrogen ◽  
Solvation Free Energies ◽  
Transient Intermediates

A computational study at correlated levels of theory is reported to address the structures and energetics of transient radicals produced by hydrogen atom abstraction from C-1, C-2, C-3, C-4, C-5, O-1, O-3, and O-5 positions in 2-deoxyribofuranose in the gas phase and in aqueous solution. In general, the carbon-centered radicals are found to be thermodynamically and kinetically more stable than the oxygen-centered ones. The most stable gas-phase radical, 2-deoxyribofuranos-5-yl (5), is produced by H-atom abstraction from C-5 and stabilized by an intramolecular hydrogen bond between the O-5 hydroxy group and O-1. The order of radical stabilities is altered in aqueous solution due to different solvation free energies. These prefer conformers that lack intramolecular hydrogen bonds and expose O-H bonds to the solvent. Carbon-centered deoxyribose radicals can undergo competitive dissociations by loss of H atoms, OH radical, or by ring cleavages that all require threshold dissociation or transition state energies >100 kJ mol-1. This points to largely non-specific dissociations of 2-deoxyribose radicals when produced by exothermic hydrogen atom abstraction from the saccharide molecule. Oxygen-centered 2-deoxyribose radicals show only marginal thermodynamic and kinetic stability and are expected to readily fragment upon formation.

scholarly journals Thermodynamics of ester and orthoester formation from trifluoroacetic acid

1976 ◽  
Vol 54 (2) ◽  
pp. 202-209 ◽  
Author(s):  
J. Peter Guthrie
Keyword(s):  
Aqueous Solution ◽  
Free Energy ◽  
Equilibrium Constant ◽  
Trifluoroacetic Acid ◽  
Sodium Methoxide ◽  
Standard Free Energy ◽  
Steric Effects ◽  
Addition Reactions ◽  
Free Energies ◽  
Acetic Acids

The equilibrium constant for the addition of sodium methoxide to methyl trifluoroacetate, in methanol as solvent, has been measured by 19F nmr, and is 7 M−1. From this was calculated an equilibrium constant, 2 × 10−4 M−1, for addition of methanol to the ester. The equilibrium constant for formation of methyl trifluoroacetate in aqueous solutions is 0.06 M−1. These results, with literature data, permit calculation of the free energies of formation in aqueous solution of orthotrifluoroacetic acid and its mono-, di-, and trimethyl esters. These in turn permit calculation of the standard free energy changes for addition of water and methanol to trifluoroacetic acid and its methyl ester. These combined with the analogous values for formic and acetic acids permit evaluation of ρ* values for these addition reactions. Linear plots are obtained if correction is made for steric effects, and the ρ* values are somewhat larger, 2.1–2.9, than was observed for the analogous carbonyl addition reactions.

scholarly journals Box size effects are negligible for solvation free energies of neutral solutes

2014 ◽  
Vol 28 (8) ◽  
pp. 825-829 ◽  
Author(s):  
Sreeja Parameswaran ◽  
David L. Mobley
Keyword(s):  
Size Effects ◽  
Free Energies ◽  
Solvation Free Energies

scholarly journals Blind prediction of solvation free energies from the SAMPL4 challenge

2014 ◽  
Vol 28 (3) ◽  
pp. 135-150 ◽  
Author(s):  
David L. Mobley ◽  
Karisa L. Wymer ◽  
Nathan M. Lim ◽  
J. Peter Guthrie
Keyword(s):  
Free Energies ◽  
Blind Prediction ◽  
Solvation Free Energies
Sign in / Sign up

Export Citation Format

Share Document