scholarly journals Combination of multiple computational methods revealing specific sub-sectional recognition and hydrogen-bond dependent transportation of CKII peptide fragment in O-GlcNAc transferase

2021 ◽  
Vol 19 ◽  
pp. 2045-2056
Author(s):  
Xiao Zhang ◽  
Zhiyang Zhang ◽  
Jia Guo ◽  
Jing Ma ◽  
Songqiang Xie ◽  
...  
2014 ◽  
Vol 16 (15) ◽  
pp. 6946-6956 ◽  
Author(s):  
Yan-Zhen Zheng ◽  
Nan-Nan Wang ◽  
Yu Zhou ◽  
Zhi-Wu Yu

We examine and compare the halogen- and hydrogen-bonding interactions between benzene derivatives and DMSO by experimental and computational methods.


2007 ◽  
Vol 06 (02) ◽  
pp. 377-397
Author(s):  
SEIFOLLAH JALILI ◽  
MINA SOLEIMANI

In this work, the interaction of hydroxyl and hydroperoxyl radicals with ethene in the presence of water molecules and the stability of C 2 H 4 + HO x + ( H 2 O )y; x = 1–2, y = 0–5 clusters were investigated using computational methods. Also, hydrogen bond of these clusters was investigated using Density Functional Theory (DFT) and Atoms in Molecules (AIM) theory. Thermodynamical parameters for the interaction of hydroxyl and hydroperoxyl radicals with ethene in the presence of water molecules were also calculated. We report new results for the interaction of hydroxyl and hydroperoxyl radicals with ethene in the presence of water molecules.


Author(s):  
Beverly E. Maleeff ◽  
Timothy K. Hart ◽  
Stephen J. Wood ◽  
Ronald Wetzel

Alzheimer's disease is characterized post-mortem in part by abnormal extracellular neuritic plaques found in brain tissue. There appears to be a correlation between the severity of Alzheimer's dementia in vivo and the number of plaques found in particular areas of the brain. These plaques are known to be the deposition sites of fibrils of the protein β-amyloid. It is thought that if the assembly of these plaques could be inhibited, the severity of the disease would be decreased. The peptide fragment Aβ, a precursor of the p-amyloid protein, has a 40 amino acid sequence, and has been shown to be toxic to neuronal cells in culture after an aging process of several days. This toxicity corresponds to the kinetics of in vitro amyloid fibril formation. In this study, we report the biochemical and ultrastructural effects of pH and the inhibitory agent hexadecyl-N-methylpiperidinium (HMP) bromide, one of a class of ionic micellar detergents known to be capable of solubilizing hydrophobic peptides, on the in vitro assembly of the peptide fragment Aβ.


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