halogen bond
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2022 ◽  
Vol 28 (2) ◽  
Author(s):  
Daniil M. Ivanov ◽  
Nadezhda A. Bokach ◽  
Vadim Yu. Kukushkin ◽  
Antonio Frontera

2022 ◽  
Author(s):  
Mrinal Kanti Si

Abstract The 2019-nCoV virus is a human-infectious coronavirus (CoV). Very few treatment options are available to healthcare professionals who are fighting this outbreak at the front. The main warning symptoms of COVID-19, the disease caused by the new coronavirus, are fever, fatigue, and a dry cough, sometimes it also causes cold-like symptoms like a runny nose which are sometimes similar to symptoms of allergies and sometimes difficult to differentiate between COVID-19 and allergies. The anti-allergic drug molecules can behave as good inhibitor against COVID-19. Molecular docking studies have been performed to examine the inhibitor properties of anti-allergic molecules against Covid-19. The searching of better inhibitors have been examined interns of various non-covalent interactions like hydrogen bond, halogen bond, vander waal’s interactions, alkyl-πand π-π interactions between small molecules (Anti-allergic medicines) with main protease of Covid-19 using molecular docking and Molecular Dynamics simulation which reveals that astemizole is best inhibitor among ten Anti-allergic drug molecules.


Molecules ◽  
2022 ◽  
Vol 27 (1) ◽  
pp. 307
Author(s):  
Fan Wang ◽  
Xiaoyan Ji ◽  
Fei Ying ◽  
Jiatao Zhang ◽  
Chongyang Zhao ◽  
...  

We characterized the stationary points along the nucleophilic substitution (SN2), oxidative insertion (OI), halogen abstraction (XA), and proton transfer (PT) product channels of M− + CH3X (M = Cu, Ag, Au; X = F, Cl, Br, I) reactions using the CCSD(T)/aug-cc-pVTZ level of theory. In general, the reaction energies follow the order of PT > XA > SN2 > OI. The OI channel that results in oxidative insertion complex [CH3–M–X]− is most exothermic, and can be formed through a front-side attack of M on the C-X bond via a high transition state OxTS or through a SN2-mediated halogen rearrangement path via a much lower transition state invTS. The order of OxTS > invTS is inverted when changing M− to Pd, a d10 metal, because the symmetry of their HOMO orbital is different. The back-side attack SN2 pathway proceeds via typical Walden-inversion transition state that connects to pre- and post-reaction complexes. For X = Cl/Br/I, the invSN2-TS’s are, in general, submerged. The shape of this M− + CH3X SN2 PES is flatter as compared to that of a main-group base like F− + CH3X, whose PES has a double-well shape. When X = Br/I, a linear halogen-bonded complex [CH3−X∙··M]− can be formed as an intermediate upon the front-side attachment of M on the halogen atom X, and it either dissociates to CH3 + MX− through halogen abstraction or bends the C-X-M angle to continue the back-side SN2 path. Natural bond orbital analysis shows a polar covalent M−X bond is formed within oxidative insertion complex [CH3–M–X]−, whereas a noncovalent M–X halogen-bond interaction exists for the [CH3–X∙··M]− complex. This work explores competing channels of the M− + CH3X reaction in the gas phase and the potential energy surface is useful in understanding the dynamic behavior of the title and analogous reactions.


Author(s):  
Tian Zhao ◽  
Vincent Lynch ◽  
Jonathan L. Sessler

Inspired by the tetracationic “Texas-sized” molecular box, a neutral analogue containing four iodotriazole halogen bond-promoting subunits (“Ibox”) was synthesized. This new macrocycle was prepared by means of azide-alkyne click chemistry....


2022 ◽  
Author(s):  
Asia Marie S Riel ◽  
Daniel Adam Decato ◽  
Jiyu Sun ◽  
Orion Berryman

Recent results indicate a halogen bond donor is strengthened through direct interaction with a hydrogen bond to the electron-rich belt of the halogen. Here, this Hydrogen Bond enhanced Halogen Bond...


CrystEngComm ◽  
2022 ◽  
Author(s):  
Vinu V Panikkattu ◽  
Abhijeet Shekhar Sinha ◽  
Christer Aakeröy

Strong halogen bonds can provide a foundation for reliable supramolecular strategies for effective self-assembly and design of functional materials. A new class of halogen-bond donors have been developed using structural...


2022 ◽  
Author(s):  
Andreas Mix ◽  
Jan-Hendrik Lamm ◽  
Jan Schwabedissen ◽  
Erich Gebel ◽  
Georg Stammler ◽  
...  

Equimolar mixtures of pyridine (Py) with para-halotetrafluoro-pyridine (BrTFP and ITFP) were investigated by VT-diffusion NMR experiments. The formation of a halogen-bond-stabilized ITFP·Py complex was de¬tected upon cooling a solution in...


CrystEngComm ◽  
2022 ◽  
Author(s):  
Yury Torubaev ◽  
Ivan V. Skabitskiy ◽  
Aleksei A. Anisimov ◽  
Ivan V. Ananyev

Along with the reported earlier co-crystal of diphenyl ditelluride (Ph2Te2) and halogen bond donor 1,4-diiodo-tetrafluorobenzene (p-DITFB) 1α, its two new polymorphic forms (1β and 1γ) present a rare case of...


2022 ◽  
Author(s):  
Atash V Gurbanov ◽  
Maxim L. Kuznetsov ◽  
Anirban Karmakar ◽  
Vusala Aliyeva ◽  
Kamran T. Mahmudov ◽  
...  

A solvothermal reaction of Cd(II) with the dicarboxyl-functionalized arylhydrazone pro-ligands - 5-(2-(2,4,6-trioxotetrahydro-pyrimidin-5(2H)-ylidene)hydrazineyl)isophthalic acid (H5L1) and 5-(2-(2,4-dioxopentan-3-ylidene)hydrazineyl)isophthalic acid (H3L2), or their halogen bond donor centre(s) decorated versions 2,4,6-triiodo-5-(2-(2,4,6-trioxotetrahydropyrimidin-5(2H)-ylidene)hydrazineyl)isophthalic acid (H5L3) and...


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