High-quality mtDNA control region sequences from 680 individuals sampled across the Netherlands to establish a national forensic mtDNA reference database

2016 ◽  
Vol 21 ◽  
pp. 158-167 ◽  
Author(s):  
Lakshmi Chaitanya ◽  
Mannis van Oven ◽  
Silke Brauer ◽  
Bettina Zimmermann ◽  
Gabriela Huber ◽  
...  
2008 ◽  
Vol 150 (1) ◽  
pp. 45-53 ◽  
Author(s):  
Jacob Höglund ◽  
Tomas Johansson ◽  
Albert Beintema ◽  
Hans Schekkerman

2017 ◽  
Vol 29 (5) ◽  
pp. 800-804
Author(s):  
Yin-Xia Li ◽  
Yi-Long Gao ◽  
Xing-Liang He ◽  
Shao-Xian Cao

2001 ◽  
Vol 49 (4) ◽  
pp. 411 ◽  
Author(s):  
Lisa Pope ◽  
Daryn Storch ◽  
Mark Adams ◽  
Craig Moritz ◽  
Greg Gordon

Short-nosed bandicoots, Isoodon, have undergone marked range contractions since European colonisation of Australia and are currently divided into many subspecies, the validity of which is debated. Discriminant function analysis of morphology and a phylogeny of Isoodon based on mtDNA control region sequences indicate a clear split between two of the three recognised species, I. macrourus and I. obesulus/auratus. However, while all previously recognised taxa within the I. obesulus/auratus group are morphologically distinct,I. auratus and I. obesulus are not phylogenetically distinct for mtDNA. The genetic divergence between I. obesulus and I. auratus (2.6%) is similar to that found among geographic isolates of the former (I. o. obesulus and I. o. peninsulae: 2.7%). Further, the divergence between geographically close populations of two different species (I. o. obesulus from Western Australia and I. a. barrowensis: 1.2%) is smaller than that among subspecies within I. auratus (I. a. barrowensisand I. auratus from northern Western Australia: 1.7%). A newly discovered population of Isoodon in the Lamb Range, far north Queensland, sympatric with a population ofI. m. torosus, is shown to represent a range extension of I. o. peninsulae (350 km). It seems plausible that what is currently considered as two species, I. obesulus and I. auratus, was once one continuous species now represented by isolated populations that have diverged morphologically as a consequence of adaptation to the diverse environments that occur throughout their range. The taxonomy of these populations is discussed in relation to their morphological distinctiveness and genetic similarity.


2021 ◽  
Vol 322 ◽  
pp. 01023
Author(s):  
Melfa Marini

Eels are economic species of fish. The diversity of eel in the world is essential knowledge that we have to know to manage fisheries in the future. One of the types of eels is Moringua Sp. There are around 11 species of Moringua sp. in the world. In Indonesia, the diversity of Moringua sp. was no information yet. The aim of this study is to the identification of Moringua sp in Indonesia. The method used in this study is a sanger sequence method using the mtDNA control region. Base on this study, we found 726 and 745 base pairs alignment of Moringua by sequencing. The result of BLAST showed identically 87% to Moringua edwardsi and 89% as a Moringua microchir. The low percentage of BLAST yields shows that the sample used for this study is not strong enough to be declared as one of the Moringua species obtained from the results of BLAST analysis. Suspected of being another Moringua species. Thus, to get robust result, further research related to this species identification using COI or Cyt-b.


2005 ◽  
Vol 62 (8) ◽  
pp. 1711-1716 ◽  
Author(s):  
Junhong Xia ◽  
Jinsong Zheng ◽  
Ding Wang

Abstract The Yangtze finless porpoise, Neophocaena phocaenoides asiaeorientalis, is an endangered small cetacean that occurs only in the middle and lower reaches of the Yangtze River of China. The establishment of a breeding population of the porpoise in Tian-e-Zhou Baiji National Natural Reserve represents the first attempt at ex situ conservation efforts for a cetacean species. With the goal of effective protection, management, and monitoring of this preserved population, we examined its genetic diversity using 930 bp of mtDNA control region sequences and 13 polymorphic microsatellite loci. A very low level of genetic variation (h = 0.6010 ± 0.0029 s.d.; π = 0.0007 ± 0.0000002 s.d.) in the mtDNA control region sequences and a moderate genetic diversity (Ho = 0.5740 ± 0.2575 s.d.) in the microsatellites were detected in the population. It is necessary to introduce more individuals with representative genetic variations into the reserve in order to form a larger and healthier group structure for long-term survival of the population. Successful establishment of the Yangtze finless porpoise population in the Reserve also provides a useful model for an ex situ conservation programme for other rare and endangered species.


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