Isolation of Clostridium Perfringens type C from a Neonatal Yangtze Finless Porpoise (Neophocaena Asiaeorientalis Asiaeorientalis)

The aim of this study was to culture pathogenic bacteria from the blowhole, lung, stomach and fecal samples of a neonatal crucially endangered Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) that died 27 days after birth. Bacteria were inoculated and representative isolates were identified through 16S rRNA gene sequence analysis. A total of three Clostridium perfringens type C strains from the fecal samples were isolated. Toxin genes, including cpa, cpb and cpb2, were detected by PCR amplification, while the etx, iap and cpe genes were absent. Biofilm formation of the three strains was examined. Only one strain was able to form a biofilm. In addition, isolates showed strong resistance against the antibiotics amikacin (3/3), erythromycin (1/3), gentamicin (3/3), streptomycin (3/3), and trimethoprim (3/3), while sensitivity to ampicillin (3/3), bacitracin (3/3), erythromycin (2/3), penicillin G (3/3), and tetracycline (3/3). The results suggested C. perfringens type C could have contributed to the death of this neonatal porpoise.

Precautionary Principle or Evidence-Based Conservation? Assessing the Information Content of Threat Data for the Yangtze Finless Porpoise

Conservation management requires evidence, but robust data on key parameters such as threats are often unavailable. Conservation-relevant insights might be available within datasets collected for other reasons, making it important to determine the information content of available data for threatened species and identify remaining data-gaps before investing time and resources in novel data collection. The Yangtze finless porpoise (Neophocaena asiaeorientalis asiaeorientalis) has declined severely across the middle-lower Yangtze, but multiple threats exist in this system and the relative impact of different anthropogenic activities is unclear, preventing identification of appropriate mitigation strategies. Several datasets containing information on porpoises or potential threats are available from past boat-based and fishing community surveys, which might provide novel insights into causes of porpoise mortality and decline. We employed multiple analytical approaches to investigate spatial relationships between live and dead porpoises and different threats, reproductive trends over time, and sustainable offtake levels, to assess whether evidence-based conservation is feasible under current data availability. Our combined analyses provide new evidence that mortality is spatially associated with increased cargo traffic; observed mortality levels (probably a substantial underestimate of true levels) are unsustainable; and population recruitment is decreasing, although multiple factors could be responsible (pollutants, declining fish stocks, anthropogenic noise, reduced genetic diversity). Available data show little correlation between patterns of mortality and fishing activity even when analyzed across multiple spatial scales; however, interview data can be affected by multiple biases that potentially complicate attempts to reconstruct levels of bycatch, and new data are required to understand dynamics and sustainability of porpoise-fisheries interactions. This critical assessment of existing data thus suggests that in situ porpoise conservation management must target multiple co-occurring threats. Even limited available datasets can provide new insights for understanding declines, and we demonstrate the importance of an integrative approach for investigating complex conservation problems and maximizing evidence in conservation planning for poorly known taxa.

​The Analysis of Reproduction-related Genes Provides Insights into the Adaptive Evolution of Fecundity Traits in Yangtze Finless Porpoise

Background: Yangtze finless porpoise (YFP, Neophocaena asiaeorientalis), is the first class protected animal in China. In order to analyze the adaptive evolution of fecundity traits in YFP, the rapidly evolving gene families of YFP were obtained. At the same time, the major genes controlling ovulation, GDF9, BMP15, FSHβ and FSHR were also analyzed. Methods: Orthofinder software was employed to search homologous genes based on protein sequence. CAFÉ software was used to obtain the expansion and contraction gene families of YFP. Then, GO terms and pathway enrichment analyses were performed using TBtools software and Swissprot database. PAML package was used to calculate Ka/Ks (i.e., ω). Evolution rate changes in the positive selected genes were examined using the GU99 process in Diverge (v3.0) program. Result: In YFP, 501 rapid expansion gene families GO enrichment results showed that the reproductive activities related pathways were mainly three significant enrichment process, participation of germline stem cells maintain androgen receptors signaling pathways regulating and male reproductive tract stem cell population to maintain. The most significant GO terms of 220 rapidly contraction gene families associated with reproductive activities mainly consisted of biological processes which were involved in positive regulation of estrogen secretion, mating and estrogen metabolic process. GDF9 and BMP15 genes exhibited purifying selection. However, significant signs of positive selection were detected in FSHR and FSHβ genes, but only FSHβ showed specific changes in the YFP lineage.

Deteriorating Habitats and Conservation Strategies to Repopulate the Endangered Indus River Dolphin (Platanista gangetica minor); a Lesson Learned From the Conservation Practices of the Yangtze Finless Porpoise (Neophocaena asiaeorientalis)

The Indus River dolphin (IRD; Platanista gangetica minor) is an endangered and blind freshwater cetacean, endemic to the Indus River system of Pakistan and India. This review article provides detailed information about the major challenges IRDs are facing, and their possible consequences on the population dynamics of the IRD. Furthermore, we have suggested future conservation strategies for the IRD based on the lesson learned from the conservation of the Yangtze finless porpoise (YFP; Neophocaena asiaeorientalis), a Critically Endangered freshwater cetacean. The major challenges for IRDs are habitat degradation, habitat fragmentation, and several types of industrial and agricultural pollutants. Worsening climatic changes, illegal fishing, and overfishing are additional threats. The construction of several barrages has fragmented the population into several short segments, some of which are too small for the IRDs to survive. In some segments, the population status of the IRD is unknown. In the remaining populations, genetic inbreeding, water shortage, canal entrapment, and altered ecological environment are potent negative factors for the survival of the IRD. Conservation strategies including fishing bans, translocation, and future research (tagging, periodic health assessments, necropsy and virtopsy, understanding the reproductive biology, and genomics) are possible recommendations. Very serious conservation efforts are needed to save the IRD from decline keeping in view the water shortage, pollution, lack of health assessment studies, and habitat degradation and fragmentation.

Population Viability Analysis of Yangtze Finless Porpoise in the Yangtze Main Steam Suggesting that a Total Ban on Productive Fishing could be Decisive

Background: China is paying more attention to ecological systems within the Yangtze River has provided great opportunities to the conservation of the Yangtze finless porpoise (YFP). The rapid population decline of YFP in the main steam appears to have slowed, but the infrequent movement of porpoises represents a considerable threat to the long-term viability of this species in this region. We studied the population viability of YFP in the Yangtze main steam, based on published ecological and genetic information.Methods: Vortex model was used to analyze the population viability of the YFP. The simulations were started from the year 2017 when the initial population size was 445 animals in baseline scenario. We examined the population viability for the species under demographic fluctuations and conservation scenarios.Result: Baseline model showed the probability of extinction was 0.245; deterministic growth rate was -0.023; stochastic growth rate was -0.036. Sensitivity analysis showed differences in population trends between the baseline and each alternative scenario and the most sensitive parameters were the percentage of females breeding and mortality rates. Under different conservation scenarios, the population of the YFP in the main stream will increase by 11.0%-181.2% in 100 years.