Genetic diversity of CD14, CD28, CTLA-4 and ICOS gene promoter polymorphism in African and American sickle cell disease

2019 ◽  
Vol 80 (11) ◽  
pp. 930-936
Author(s):  
Brooke N. Seamans ◽  
Summer L. Pellechio ◽  
Anna L. Capria ◽  
Smith E. Agyingi ◽  
Olanrewaju B. Morenikeji ◽  
...  
PeerJ ◽  
2015 ◽  
Vol 3 ◽  
pp. e799 ◽  
Author(s):  
Jenelle A. Noble ◽  
Kimberley C. Duru ◽  
Aldiouma Guindo ◽  
Li Yi ◽  
Ikhide G. Imumorin ◽  
...  

2008 ◽  
Vol 53 (6) ◽  
pp. 524-528 ◽  
Author(s):  
Rute Martins ◽  
Anabela Morais ◽  
Alexandra Dias ◽  
Isabel Soares ◽  
Cristiana Rolão ◽  
...  

2016 ◽  
Vol 8 ◽  
pp. 2016013 ◽  
Author(s):  
Mathew Zachariah ◽  
Anil Pathare

Objectives: Our objective was to study mannose binding protein (MBP) polymorphisms in exonic and promoter region and correlate associated infections and vasoocculsive (VOC) episodes, since MBP plays an important role in innate immunity by activating the complement system.Methods: We studied the genetic polymorphisms in the Exon 1 (alleles A/O) and promoter region (alleles Y/X; H/L, P/Q) of the MBL2 gene, in sickle cell disease (SCD) patients as increased incidence of infections is seen in these patients. A PCR-based, targeted genomic DNA sequencing of MBL2 was used to study 68 SCD Omani patients and 44 controls (voluntary blood donors).Results: The observed frequencies of MBL2 promoter polymorphism (-221, Y/X) were 44.4% and 20.5% for the heterozygous genotype Y/X and 3.2% and 2.2% for the homozygous (X/X) respectively between SCD patients and controls. MBL2 Exon1 gene mutations were 29.4% and 50% for the heterozygous genotype A/O and 5.9% and 6.8% respectively for the homozygous (O/O) genotype between SCD patients and controls. The distribution of variant MBL2 polymorphisms did not show any correlation in SCD patients with or without vasoocculsive crisis (VOC) attacks (p=0.162; OR-0.486; CI=0.177 -1.33), however, it was correlated with infections (p=0.0162; OR-3.55; CI 1.25-10.04).Conclusions: Although the frequency of the genotypes and haplotypes of MBL2 in SCD patients did not differ from controls, overall in the SCD patient cohort the increased representation of variant alleles was significantly correlated with infections (p<0.05). However, these variant MBL2 polymorphisms did not seem to play a significant role in the VOC episodes in this SCD cohort.Keywords: Mannose-binding lectin, polymorphism, promoter, Sickle cell disease, MBL2, MBP  


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 4303-4303
Author(s):  
Si Ho Choi ◽  
Hyang-Min Byun ◽  
Jennifer Kwan ◽  
Allen S. Yang

Abstract 5-azacytidine (azacitidine, Vidaza) and 5-aza-2′deoxycytidine (decitabine, Dacogen) are cytidine analogs currently used to treat myelodysplastic syndrome and as an investigational agent to treat acute myelogenous leukemia, sickle cell disease and other cancers. Decitabine is phosphorylated to a triphosphate form and incorporated into DNA where it can covalently trap DNA methyltransferase. Azacitidine is also phosphorylated to a triphosphate form, but requires reduction from a ribonucleotide to a deoxyribonucleotide by ribonucleotide reductase (RR) before incorporation into DNA. Hydroxyurea (Hydrea) is a drug routinely used to treat patients with leukemia and sickle cell disease. Hydroxyurea inhibits cell proliferation by inhibiting RR. Inhibition of RR leads to a depletion of nucleotide pools and cell cycle arrest in S-phase. Therefore, we hypothesized that the combination of hydroxyurea with azacitidine would be antagonistic to the ability of azacitidine to inhibit DNA methylation, and synergistic with decitabine in inhibiting DNA methylation. Hydroxyurea inhibits RR, which could block the conversion of azacitidine from a ribonucleotide to a deoxyribonucleotide, and therefore prevent its incorporation into DNA. In contrast, decitabine could increase its incorporation into DNA by taking advantage of a depletion of other deoxynucleotides induced RR inhibition by hydroxyurea. In order to test this hypothesis, we treated HL-60 (leukemia) and T24 (bladder cancer) cell lines with hydroxyurea in combination with either decitabine or azacitidine. DNA methylation was quantitated using Bisulfite-PCR Pyrosequencing of LINE-1 DNA repetitive elements, the MAGE-A1 gene and the p16 gene promoter region. We clearly showed that hydroxyurea at concentrations above 0.5 mM completely blocked the ability of azacitidine to inhibit DNA methylation (IC50=0.36 ± 0.04 mM). Surprisingly, we found that hydroxyurea at concentrations above 0.5mM also completely inhibited the effect of decitabine on DNA methylation (IC50=0.24 ± 0.06 mM). Further investigation showed that inhibition of the ability to block DNA methylation correlated with inhibition of the cell cycle. Using flow cytometry we clearly show that the antagonistic effect of hydroxyurea on DNA methylation inhibitors correlates with the arresting of cell division in S-phase. Aphidicolin, which inhibits DNA polymerase, also blocked the cell cycle and the ability of azacitidine and decitabine to inhibit DNA methylation. Thus, azacitidine and decitabine are S-phase specific drugs and are antagonized when used in combination with drugs that arrest the cell cycle. However, we also show that sequential treatment of hydroxyurea followed by azacitidine or decitabine could be used to avoid this antagonism. Therefore, due to the antagonistic effect of hydroxyurea with the mechanistic inhibitors of DNA methylation, azacitidine and decitabine, we recommend sequential combination treatment strategy.


Blood ◽  
2012 ◽  
Vol 120 (18) ◽  
pp. 3822-3828 ◽  
Author(s):  
Christopher J. Bean ◽  
Sheree L. Boulet ◽  
Dorothy Ellingsen ◽  
Meredith E. Pyle ◽  
Emily A. Barron-Casella ◽  
...  

Abstract Sickle cell disease is a common hemolytic disorder with a broad range of complications, including vaso-occlusive episodes, acute chest syndrome (ACS), pain, and stroke. Heme oxygenase-1 (gene HMOX1; protein HO-1) is the inducible, rate-limiting enzyme in the catabolism of heme and might attenuate the severity of outcomes from vaso-occlusive and hemolytic crises. A (GT)n dinucleotide repeat located in the promoter region of the HMOX1 gene is highly polymorphic, with long repeat lengths linked to decreased activity and inducibility. We examined this polymorphism to test the hypothesis that short alleles are associated with a decreased risk of adverse outcomes (hospitalization for pain or ACS) among a cohort of 942 children with sickle cell disease. Allele lengths varied from 13 to 45 repeats and showed a trimodal distribution. Compared with children with longer allele lengths, children with 2 shorter alleles (4%; ≤ 25 repeats) had lower rates of hospitalization for ACS (incidence rate ratio 0.28, 95% confidence interval, 0.10-0.81), after adjusting for sex, age, asthma, percentage of fetal hemoglobin, and α-globin gene deletion. No relationship was identified between allele lengths and pain rate. We provide evidence that genetic variation in HMOX1 is associated with decreased rates of hospitalization for ACS, but not pain. This study is registered at www.clinicaltrials.gov as #NCT00072761.


Hematology ◽  
2009 ◽  
Vol 2009 (1) ◽  
pp. 178-184 ◽  
Author(s):  
Stella T. Chou ◽  
Connie M. Westhoff

Abstract The last decade has witnessed an abundance of information detailing the genetic diversity of the RH locus which has exceeded all estimates predicted by serology. Well over 120 RHD and over 60 different RHCE alleles have been documented, and new alleles are still being discovered. For clinical transfusion medicine, RH genetic testing can now be used to determine RHD zygosity, resolve D antigen status, and detect altered RHD and RHCE genes in individuals at risk for producing antibodies to high-incidence Rh antigens, particularly patients with sickle cell disease (SCD).


2014 ◽  
Author(s):  
Jenelle A Noble ◽  
Kimberley C Duru ◽  
Aldiouma Guindo ◽  
Li Yi ◽  
Dapa A Diallo ◽  
...  

Elucidating the genomic diversity of CD209 gene promoter polymorphisms could assist in clarifying disease pathophysiology as well as contribution to co-morbidities. CD209 gene promoter polymorphisms have been shown to be associated with susceptibility to infection. We hypothesize that CD209 mutant variants occur at a higher frequency among Africans and in sickle cell disease. We analyzed the frequency of the CD209 gene (rs4804803) in healthy control and sickle cell disease (SCD) populations and determined association with disease. We obtained genomic DNA from 145 SCD and 244 control Africans (from Mali), 331 SCD and 379 control African Americans and 159 Caucasians. Comparative analysis among and between groups was carried out by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). Per ethnic diversification, we found significant disparity in genotypic (23.4% versus 16.9% versus 3.2%) and allelic frequencies (36.1% versus 25.1% versus 11.6%) of the mutant variant of the CD209 (snp 309A/G) gene promoter between Africans, African Americans and Caucasians respectively. Surprisingly, there was a wide disparity in the genotypic and allelic frequencies among African SCD versus healthy controls (10.4% versus 23.4% (genotypes) and 25.2% versus 36.1% (alleles), which is completely absent among African Americans. Comparing SCD groups, there was no difference between Africans and Americans, implying a lack of association between CD209 polymorphisms and sickle cell disease in either population. The higher frequency of CD209 mutant variants in the non-SCD group reveals an impaired capacity to mount an immune response to infectious diseases. We conclude that CD209 polymorphism play a major role in susceptibility to infectious pathogens and could potentially delineate susceptibility to and severity of co-morbidities.


2014 ◽  
Author(s):  
Jenelle A Noble ◽  
Kimberley C Duru ◽  
Aldiouma Guindo ◽  
Li Yi ◽  
Dapa A Diallo ◽  
...  

Elucidating the genomic diversity of CD209 gene promoter polymorphisms could assist in clarifying disease pathophysiology as well as contribution to co-morbidities. CD209 gene promoter polymorphisms have been shown to be associated with susceptibility to infection. We hypothesize that CD209 mutant variants occur at a higher frequency among Africans and in sickle cell disease. We analyzed the frequency of the CD209 gene (rs4804803) in healthy control and sickle cell disease (SCD) populations and determined association with disease. We obtained genomic DNA from 145 SCD and 244 control Africans (from Mali), 331 SCD and 379 control African Americans and 159 Caucasians. Comparative analysis among and between groups was carried out by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP). Per ethnic diversification, we found significant disparity in genotypic (23.4% versus 16.9% versus 3.2%) and allelic frequencies (36.1% versus 25.1% versus 11.6%) of the mutant variant of the CD209 (snp 309A/G) gene promoter between Africans, African Americans and Caucasians respectively. Surprisingly, there was a wide disparity in the genotypic and allelic frequencies among African SCD versus healthy controls (10.4% versus 23.4% (genotypes) and 25.2% versus 36.1% (alleles), which is completely absent among African Americans. Comparing SCD groups, there was no difference between Africans and Americans, implying a lack of association between CD209 polymorphisms and sickle cell disease in either population. The higher frequency of CD209 mutant variants in the non-SCD group reveals an impaired capacity to mount an immune response to infectious diseases. We conclude that CD209 polymorphism play a major role in susceptibility to infectious pathogens and could potentially delineate susceptibility to and severity of co-morbidities.


Haematologica ◽  
2021 ◽  
Author(s):  
Pierre Allard ◽  
Nareen Alhaj ◽  
Stephan Lobitz ◽  
Holger Cario ◽  
Andreas Jarisch ◽  
...  

The course of sickle cell disease (SCD) is modified by polymorphisms boosting fetal hemoglobin (HbF) synthesis. However, it has remained an open question how these polymorphisms affect patients who are treated with the HbF-inducing drug hydroxyurea/hydroxycarbamide. The German SCD registry offers the opportunity to answer this question, because >90% of patients are treated according to national guidelines recommending the use of hydroxyurea in all patients above 2 years of age. We analyzed the modifying effect of HbF-related genetic polymorphisms in 417 patients with homozygous SCD >2 years who received hydroxyurea. HbF levels were correlated with higher total hemoglobin levels, lower rates of hemolysis, a lower frequency of painful crises and of red blood cell transfusions. The minor alleles of the polymorphisms in the γ-globin promoter (rs7482144), BCL11A (rs1427407) and HMIP (rs66650371) were strongly associated with increased HbF levels. However, these associations did not translate into lower frequencies of vasoocclusive events that did not differ between patients either carrying or not carrying the HMIP and BCL11A polymorphisms. Patients on hydroxyurea carrying the γ- globin promoter polymorphism demonstrated substantially higher hemoglobin levels (p


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