scholarly journals Next Generation Sequencing-based Genetic Screening in Breast Cancer Risk for Relatives of BRCA Positive Index Cases - A Subcontinent Experience

2020 ◽  
Vol 108 (3) ◽  
pp. e516-e517
Author(s):  
K. Sekar ◽  
G. Lohith ◽  
S.P. Susheela ◽  
V. Kumar ◽  
P. Sinha ◽  
...  
2016 ◽  
Author(s):  
Nancy A. Uhrhammer ◽  
Nagi El Saghir ◽  
Yannick Bidet ◽  
Manon Delahaye-Sourdeix ◽  
Flora Ponelle ◽  
...  

2021 ◽  
Author(s):  
Michela Biancolella ◽  
Nabonswindé Lamoussa Marie Ouedraogo ◽  
Nayi Zongo ◽  
Théodora Mahoukèdè Zohoncon ◽  
Barbara Testa ◽  
...  

Abstract Background: Breast cancer (BC) is the most commonly diagnosed cancer and the second leading cause of cancer-related deaths, after cervical cancer, among women in Africa. Even if the epidemiological data are now aligned with those relating to industrialized countries, the knowledge concerning breast cancer in Africa, in particularly in Western Africa still lack clinical data, medical treatments, and the evaluation of genetic and non-genetic factors implicated in the etiology of the disease.The early onset and the aggressiveness of diagnosed breast cancers in patients of African ancestry strongly suggest that the genetic risk factor may play an important role but up to date very few studies have been done concerning the impact of germ line mutations in breast cancer in Africa, with a negative impact on prevention, awareness and patient management.We have performed by Next Generation sequencing (NGS) the analysis of all coding regions and the exon-intron junctions of BRCA1 and BRCA2 genes, the two most important genes in hereditary breast cancer, in fifty-one women from Burkina Faso with early onset of breast cancer and or without a family history.Results: We identified six different pathogenic mutations (3 in BRCA1, 3 in BRCA2), two of which have been found to be recurrent , in 8 unrelated women.In addition, we identified, in 4 other patients, two variants of uncertain clinical significance (VUS) and two variants never previously described in literature, although one of which is present in the dbSNP database.Conclusions: The present study is the first in which the entire coding sequence of BRCA genes have been analyzed by Next Generation Sequencing in Burkinabe young women with breast cancer. Our data support the importance of genetic risk factors in the etiology of breast cancer in this population and suggests the necessity to improve the genetic cancer risk assessment. Furthermore, the identification of the most frequent mutations of BRCA1 and BRCA2 in the population of Burkina Faso will allow the development of an inexpensive genetic test for the identification of subjects at high genetic cancer risk, which could be used to design personalized therapeutic protocols.


2021 ◽  
Vol 15 (1) ◽  
Author(s):  
Michela Biancolella ◽  
Nabonswindé Lamoussa Marie Ouédraogo ◽  
Nayi Zongo ◽  
Théodora Mahoukèdè Zohoncon ◽  
Barbara Testa ◽  
...  

Abstract Background Breast cancer (BC) is the most commonly diagnosed cancer and the second leading cause of cancer-related deaths among women in Africa after cervical cancer. Even if the epidemiological data are now aligned with those relating to industrialized countries, the knowledge concerning breast cancer in Africa, particularly in Western Africa, still lack clinical data, medical treatments, and the evaluation of genetic and non-genetic factors implicated in the etiology of the disease. The early onset and the aggressiveness of diagnosed breast cancers in patients of African ancestry strongly suggest that the genetic risk factor may be a key component, but so far, very few studies on the impact of germ line mutations in breast cancer in Africa have been conducted, with negative consequences on prevention, awareness and patient management. Through Next Generation sequencing (NGS), we analyzed all of the coding regions and the exon–intron junctions of BRCA1 and BRCA2 genes—the two most important genes in hereditary breast cancer—in fifty-one women from Burkina Faso with early onset of breast cancer with or without a family history. Results We identified six different pathogenic mutations (three in BRCA1, three in BRCA2), two of which were recurrent in eight unrelated women. Furthermore, we identified, in four other patients, two variants of uncertain clinical significance (VUS) and two variants never previously described in literature, although one of them is present in the dbSNP database. Conclusions This is the first study in which the entire coding sequence of BRCA genes has been analyzed through Next Generation Sequencing in Burkinabe young women with breast cancer. Our data support the importance of genetic risk factors in the etiology of breast cancer in this population and suggest the necessity to improve the genetic cancer risk assessment. Furthermore, the identification of the most frequent mutations of BRCA1 and BRCA2 in the population of Burkina Faso will allow the development of an inexpensive genetic test for the identification of subjects at high genetic cancer risk, which could be used to design personalized therapeutic protocols.


2020 ◽  
Vol 111 (4) ◽  
pp. 1375-1384 ◽  
Author(s):  
Po‐Han Lin ◽  
Ming Chen ◽  
Li‐Wei Tsai ◽  
Chiao Lo ◽  
Tzu‐Chun Yen ◽  
...  

2013 ◽  
Vol 2 (2) ◽  
pp. 104-111 ◽  
Author(s):  
Joakim Crona ◽  
Alberto Delgado Verdugo ◽  
Dan Granberg ◽  
Staffan Welin ◽  
Peter Stålberg ◽  
...  

BackgroundRecent findings have shown that up to 60% of pheochromocytomas (PCCs) and paragangliomas (PGLs) are caused by germline or somatic mutations in one of the 11 hitherto known susceptibility genes: SDHA, SDHB, SDHC, SDHD, SDHAF2, VHL, HIF2A (EPAS1), RET, NF1, TMEM127 and MAX. This list of genes is constantly growing and the 11 genes together consist of 144 exons. A genetic screening test is extensively time consuming and expensive. Hence, we introduce next-generation sequencing (NGS) as a time-efficient and cost-effective alternative.MethodsTumour lesions from three patients with apparently sporadic PCC were subjected to whole exome sequencing utilizing Agilent Sureselect target enrichment system and Illumina Hi seq platform. Bioinformatics analysis was performed in-house using commercially available software. Variants in PCC and PGL susceptibility genes were identified.ResultsWe have identified 16 unique genetic variants in PCC susceptibility loci in three different PCC, spending less than a 30-min hands-on, in-house time. Two patients had one unique variant each that was classified as probably and possibly pathogenic: NF1 Arg304Ter and RET Tyr791Phe. The RET variant was verified by Sanger sequencing.ConclusionsNGS can serve as a fast and cost-effective method in the clinical genetic screening of PCC. The bioinformatics analysis may be performed without expert skills. We identified process optimization, characterization of unknown variants and determination of additive effects of multiple variants as key issues to be addressed by future studies.


2019 ◽  
Vol 21 (2) ◽  
pp. 307-317 ◽  
Author(s):  
Sounak Gupta ◽  
Chad M. Vanderbilt ◽  
Paolo Cotzia ◽  
Javier A. Arias-Stella ◽  
Jason C. Chang ◽  
...  

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