Retrieving leaf area index in discontinuous forest using ICESat/GLAS full-waveform data based on gap fraction model

Understory vegetation plays an important role in the structure and function of forest ecosystems. Light detection and ranging (LiDAR) can provide understory information in the form of either point cloud or full-waveform data. Point cloud data have a remarkable ability to represent the three-dimensional structures of vegetation, while full-waveform data contain more detailed information on the interactions between laser pulses and vegetation; both types have been widely used to estimate various forest canopy structural parameters, including leaf area index (LAI). Here, we present a new method for quantifying understory LAI in a temperate forest by combining the advantages of both types of LiDAR data. To achieve this, we first estimated the vertical distribution of the gap probability using point cloud data to automatically determine the height boundary between overstory and understory vegetation at the plot level. We then deconvolved the full-waveform data to remove the blurring effect caused by the system pulse to restore the vertical resolution of the LiDAR system. Subsequently, we decomposed the deconvolved data and integrated the plot-level boundary height to differentiate the waveform components returned from the overstory, understory, and soil layers. Finally, we modified the basic LiDAR equations introducing understory leaf spectral information to quantify the understory LAI. Our results, which were validated against ground-based measurements, show that the new method produced a good estimation of the understory LAI with an R2 of 0.54 and a root-mean-square error (RMSE) of 0.21. Our study demonstrates that the understory LAI can be successfully quantified through the combined use of point cloud and full-waveform LiDAR data.

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Extracting Leaf Area Index Using Viewing Geometry Effects - A New Perspective on High-Resolution Unmanned Aerial System Photography.

10.31220/osf.io/jcxa9 ◽

2020 ◽

Author(s):

Lukas Roth ◽

Helge Aasen ◽

Achim Walter ◽

Frank Liebisch

Keyword(s):

Leaf Area Index ◽

Leaf Area ◽

Plant Ecology ◽

Growth And Yield ◽

Unmanned Aerial System ◽

Area Index ◽

Handheld Device ◽

Gap Fraction ◽

Rgb Images ◽

New Perspective

Abstract Extraction of leaf area index (LAI) is an important prerequisite in numerous studies related to plant ecology, physiology and breeding. LAI is indicative for the performance of a plant canopy and of its potential for growth and yield. In this study, a novel method to estimate LAI based on RGB images taken by an unmanned aerial system (UAS) is introduced. Soybean was taken as the model crop of investigation. The method integrates viewing geometry information in an approach related to gap fraction theory. A 3-D simulation of virtual canopies helped developing and verifying the underlying model. In addition, the method includes techniques to extract plot based data from individual oblique images using image projection, as well as image segmentation applying an active learning approach. Data from a soybean field experiment were used to validate the method. The thereby measured LAI 14 prediction accuracy was comparable with the one of a gap fraction-based handheld device (R2 of 0.92, RMSE of 0.42 m2 m2) and correlated well with destructive LAI measurements (R2 of 0.89, RMSE of 0.41 m2 m2). These results indicate that, if respecting the range (LAI ≤3) the method was tested for, extracting LAI from UAS derived RGB images using viewing geometry information represents a valid alternative to destructive and optical handheld device LAI measurements in soybean. Thereby, we open the door for automated, high-throughput assessment of LAI in plant and crop science.

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