Determination of DNA base composition by small scale acrylamide–CsCl gradient centrifugation

2005 ◽  
Vol 63 (3) ◽  
pp. 155-160 ◽  
Author(s):  
Il-Young Ahn ◽  
Carlos E. Winter
1972 ◽  
Vol 18 (7) ◽  
pp. 963-968 ◽  
Author(s):  
Beverley R. Green ◽  
Michael W. Dick

The DNA base compositions of seven members of the Saprolegniaceae were determined by cesium chloride (CsCl) gradient centrifugation. In general, base composition data correlated with morphological classification, but in several cases it indicated the necessity for revisions. In particular, Achlya inflata (eccentric group) was 42% guanine–cytosine (GC), while A. racemosa, A. sparrowii, and A. colorata (racemose group) were 51–52% GC.Two isolates of Saprolegnia diclina and one of S. parasitica were 58–59% GC and all contained 10–20% of a lighter density satellite DNA.Analysis of thermal denaturation curves by a modification of De Ley's method (J. Theoret. Biol. 22: 89 (1969)) showed that as little as 7.4% GC difference represents a large difference in DNA sequence homology. Therefore, base composition data by itself can provide a rigorous aid to the classification of the oomycetous fungi at the generic level.


1966 ◽  
Vol 16 (1) ◽  
pp. 107-113 ◽  
Author(s):  
P.C. Huang ◽  
Eugene Rosenberg

2007 ◽  
Vol 28 (3) ◽  
pp. 366-372 ◽  
Author(s):  
Ngoc-Phuc Hua ◽  
Takeshi Naganuma

1976 ◽  
Vol 31 (9-10) ◽  
pp. 554-557 ◽  
Author(s):  
Hans-Joachim Breter ◽  
Ferdinand Hundt ◽  
Rudolf K. Zahn

Abstract The (adenine + thymine)/(guanine + cytosine) base ratios of 19 species of adriatic sponges have been determined by high-pressure liquid cation-exchange chromatography. The base ratios vary from 1.49 (Mycale massa) to 0.63 (Hippospongia communis) according to an (A+T) content of 59.7 and 38.6 mol%, respectively. The DNAs of sponges of the order Keratosa showed marked differences in their (A +T) contents (39.5 to 58.8 mol%) whereas those of Tetractinellida and Halichondrina were nearly identical (39.3 to 40.8 and 49.5 to 49.8 mol%, respectively). The 5-methylcytosine (5MC) content was determined in 8 sponge DNAs by a semiquantitative method. The values differed from 0.8 to 2.2 mol% of 5MC.


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