scholarly journals Comparison of domain adaptation techniques for white matter hyperintensity segmentation in brain MR images

2021 ◽  
pp. 102215
Author(s):  
Vaanathi Sundaresan ◽  
Giovanna Zamboni ◽  
Nicola K. Dinsdale ◽  
Peter M. Rothwell ◽  
Ludovica Griffanti ◽  
...  
2021 ◽  
Author(s):  
Vaanathi Sundaresan ◽  
Giovanna Zamboni ◽  
Nicola K. Dinsdale ◽  
Peter M. Rothwell ◽  
Ludovica Griffanti ◽  
...  

AbstractRobust automated segmentation of white matter hyperintensities (WMHs) in different datasets (domains) is highly challenging due to differences in acquisition (scanner, sequence), population (WMH amount and location) and limited availability of manual segmentations to train supervised algorithms. In this work we explore various domain adaptation techniques such as transfer learning and domain adversarial learning methods, including domain adversarial neural networks and domain unlearning, to improve the generalisability of our recently proposed triplanar ensemble network, which is our baseline model. We evaluated the domain adaptation techniques on source and target domains consisting of 5 different datasets with variations in intensity profile, lesion characteristics and acquired using different scanners. For transfer learning, we also studied various training options such as minimal number of unfrozen layers and subjects required for finetuning in the target domain. On comparing the performance of different techniques on the target dataset, unsupervised domain adversarial training of neural network gave the best performance, making the technique promising for robust WMH segmentation.


2014 ◽  
Vol 2014 ◽  
pp. 1-7 ◽  
Author(s):  
Yi Zhong ◽  
David Utriainen ◽  
Ying Wang ◽  
Yan Kang ◽  
E. Mark Haacke

White matter hyperintensities (WMH) seen on T2WI are a hallmark of multiple sclerosis (MS) as it indicates inflammation associated with the disease. Automatic detection of the WMH can be valuable in diagnosing and monitoring of treatment effectiveness. T2 fluid attenuated inversion recovery (FLAIR) MR images provided good contrast between the lesions and other tissue; however the signal intensity of gray matter tissue was close to the lesions in FLAIR images that may cause more false positives in the segment result. We developed and evaluated a tool for automated WMH detection only using high resolution 3D T2 fluid attenuated inversion recovery (FLAIR) MR images. We use a high spatial frequency suppression method to reduce the gray matter area signal intensity. We evaluate our method in 26 MS patients and 26 age matched health controls. The data from the automated algorithm showed good agreement with that from the manual segmentation. The linear correlation between these two approaches in comparing WMH volumes was found to beY=1.04X+1.74  (R2=0.96). The automated algorithm estimates the number, volume, and category of WMH.


2020 ◽  
Author(s):  
Vaanathi Sundaresan ◽  
Giovanna Zamboni ◽  
Peter M. Rothwell ◽  
Mark Jenkinson ◽  
Ludovica Griffanti

AbstractWhite matter hyperintensities (WMHs) have been associated with various cerebrovascular and neurodegenerative diseases. Reliable quantification of WMHs is essential for understanding their clinical impact in normal and pathological populations. Automated segmentation of WMHs is highly challenging due to heterogeneity in WMH characteristics between deep and periventricular white matter, presence of artefacts and differences in the pathology and demographics of populations. In this work, we propose an ensemble triplanar network that combines the predictions from three different planes of brain MR images to provide an accurate WMH segmentation. Also, the network uses anatomical information regarding WMH spatial distribution in loss functions for improving the efficiency of segmentation and to overcome the contrast variations between deep and periventricular WMHs. We evaluated our method on 5 datasets, of which 3 are part of a publicly available dataset (training data for MICCAI WMH Segmentation Challenge 2017 - MWSC 2017) consisting of subjects from three different cohorts. On evaluating our method separately in deep and periventricular regions, we observed robust and comparable performance in both regions. Our method performed better than most of the existing methods, including FSL BIANCA, and on par with the top ranking deep learning method of MWSC 2017.


2017 ◽  
Vol 37 (1) ◽  
pp. 143-158 ◽  
Author(s):  
Chelli N. Devi ◽  
Anupama Chandrasekharan ◽  
Sundararaman V.K. ◽  
Zachariah C. Alex

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