scholarly journals Geometric distortion correction for echo planar images using nonrigid registration with spatially varying scale

2008 ◽  
Vol 26 (10) ◽  
pp. 1388-1397 ◽  
Author(s):  
Yong Li ◽  
Ning Xu ◽  
J. Michael Fitzpatrick ◽  
Benoit M. Dawant
2020 ◽  
Author(s):  
Vinai Roopchansingh ◽  
Jerry J. French ◽  
Dylan M. Nielson ◽  
Richard C. Reynolds ◽  
Daniel R. Glen ◽  
...  

AbstractTask, resting state, and diffusion MRI data are usually acquired from subjects using echo-planar based imaging techniques. These techniques are highly susceptible to B0 homogeneity effects that result in geometric distortions in the reconstructed images. As researchers work to link the information from these scans back to various developmental stages, or to conditions and diseases in specific regions or structures of the brain, it becomes critical to have accurate correspondence between more geometrically distorted echo-planar images and less geometrically distorted anatomical images. A variety of techniques and tools have been developed to improve this correspondence. The basic premise behind most techniques used to mitigate geometric distortion is to acquire enough information to inform software tools how echo-planar images are warped, then have them undo that warping. Here, we investigate the application of two common methods: B0 correction, and reverse-polarity phase-encoding (or reverse blip) correction. We implement each of these in two separate, widely used software packages in the field: AFNI and FSL. We find that using either technique in either software package results in reduced geometric distortions in the EPI images. We discuss the practical implementations of these methods (e.g., increased scan and processing time). In general, however, both methods possess readily available data acquisition schemes, and are highly efficient to include in processing streams. Due to the overall data improvement, we strongly recommend that researchers include one of these methods in their standard protocols.


2016 ◽  
Vol 34 (6) ◽  
pp. 832-838 ◽  
Author(s):  
Andrew D. Davis ◽  
Michael D. Noseworthy

2009 ◽  
Vol 61 (4) ◽  
pp. 994-1000 ◽  
Author(s):  
Iulius Dragonu ◽  
Baudouin Denis de Senneville ◽  
Bruno Quesson ◽  
Chrit Moonen ◽  
Mario Ries

Author(s):  
Renaud Hedouin ◽  
Olivier Commowick ◽  
Maxime Taquet ◽  
Elise Bannier ◽  
Benoit Scherrer ◽  
...  

2014 ◽  
Vol 32 (5) ◽  
pp. 590-593 ◽  
Author(s):  
Neil Gelman ◽  
Ally Silavi ◽  
Udunna Anazodo

2008 ◽  
Vol 62 (suppl_1) ◽  
pp. ONS209-ONS216 ◽  
Author(s):  
Neculai Archip ◽  
Olivier Clatz ◽  
Stephen Whalen ◽  
Simon P. DiMaio ◽  
Peter M. Black ◽  
...  

Abstract Objective: Preoperative magnetic resonance imaging (MRI), functional MRI, diffusion tensor MRI, magnetic resonance spectroscopy, and positron-emission tomographic scans may be aligned to intraoperative MRI to enhance visualization and navigation during image-guided neurosurgery. However, several effects (both machine- and patient-induced distortions) lead to significant geometric distortion of intraoperative MRI. Therefore, a precise alignment of these image modalities requires correction of the geometric distortion. We propose and evaluate a novel method to compensate for the geometric distortion of intraoperative 0.5-T MRI in image-guided neurosurgery. Methods: In this initial pilot study, 11 neurosurgical procedures were prospectively enrolled. The scheme used to correct the geometric distortion is based on a nonrigid registration algorithm introduced by our group. This registration scheme uses image features to establish correspondence between images. It estimates a smooth geometric distortion compensation field by regularizing the displacements estimated at the correspondences. A patient-specific linear elastic material model is used to achieve the regularization. The geometry of intraoperative images (0.5 T) is changed so that the images match the preoperative MRI scans (3 T). Results: We compared the alignment between preoperative and intraoperative imaging using 1) only rigid registration without correction of the geometric distortion, and 2) rigid registration and compensation for the geometric distortion. We evaluated the success of the geometric distortion correction algorithm by measuring the Hausdorff distance between boundaries in the 3-T and 0.5-T MRIs after rigid registration alone and with the addition of geometric distortion correction of the 0.5-T MRI. Overall, the mean magnitude of the geometric distortion measured on the intraoperative images is 10.3 mm with a minimum of 2.91 mm and a maximum of 21.5 mm. The measured accuracy of the geometric distortion compensation algorithm is 1.93 mm. There is a statistically significant difference between the accuracy of the alignment of preoperative and intraoperative images, both with and without the correction of geometric distortion (P < 0.001). Conclusion: The major contributions of this study are 1) identification of geometric distortion of intraoperative images relative to preoperative images, 2) measurement of the geometric distortion, 3) application of nonrigid registration to compensate for geometric distortion during neurosurgery, 4) measurement of residual distortion after geometric distortion correction, and 5) phantom study to quantify geometric distortion.


Sign in / Sign up

Export Citation Format

Share Document