scholarly journals A standardized and miniaturized method to investigate rhizosphere microorganisms, with a focus on methanogenic archaea and methanotrophic bacteria

Pedobiologia ◽  
2021 ◽  
pp. 150775
Author(s):  
Theresa Rzehak ◽  
Nadine Praeg ◽  
Paul Illmer
Author(s):  
T.A. Fassel ◽  
M.J. Schaller ◽  
C.C. Remsen

Methane, a contributor to the “greenhouse effect”, is oxidized in the natural environment by methanotrophic bacteria. As part of a comprehensive research effort, we have been examining the ultrastructure of methanotrophs. These microorganisms have complex outer cell wall structures similar to those frequently found in other chemol itho- trophic bacteria. (1,2)In our work, we have focused on the “type” strains of Methylomonas albus BG8 and Methylosinus trichosporium OB3b. Between Spurr and LR White embedding resins, we found a difference 1n the preservation of an outer cup layer of BG8 external to the peripheral membranes. Cells from the same sample embedded in Spurr consistently lacked this feature (FIG. 1). This effect was overcome by an en bloc ruthenium red (RR) protocol that resulted in successful retention of the cup layer in Spurr resin (FIG. 2). For OB3b cells, the en bloc RR protocol resulted in an exterior bead feature distinguishable in thin section (FIG. 4) that previously was seen only by SEM.


2020 ◽  
Vol 65 (6) ◽  
pp. 1219-1229
Author(s):  
В.А. Четырбоцкий ◽  
◽  
А.Н. Четырбоцкий ◽  
Б.В. Левин ◽  
◽  
...  

A numerical simulation of the spatial-temporal dynamics of a multi-parameter system is developed. The components of this system are plant biomass, mobile and stationary forms of mineral nutrition elements, rhizosphere microorganisms and environmental parameters (temperature, humidity, acidity). Parametric identification and verification of the adequacy of the model were carried out based on the experimental data on the growth of spring wheat «Krasnoufimskaya-100» on peat lowland soil. The results are represented by temporal distributions of biomass from agricultural crop under study and the findings on the content of main nutrition elements within the plant (nitrogen, phosphorus, potassium). An agronomic assessment and interpretation of the obtained results are given.


Author(s):  
E. Fernández-Palacios ◽  
Xudong Zhou ◽  
Mabel Mora ◽  
David Gabriel

In this study, the long-term performance and microbial dynamics of an Upflow Anaerobic Sludge Blanket (UASB) reactor targeting sulfate reduction in a SOx emissions treatment system were assessed using crude glycerol as organic carbon source and electron donor under constant S and C loading rates. The reactor was inoculated with granular sludge obtained from a pulp and paper industry and fed at a constant inlet sulfate concentration of 250 mg S-SO42−L−1 and a constant C/S ratio of 1.5 ± 0.3 g Cg−1 S for over 500 days. Apart from the regular analysis of chemical species, Illumina analyses of the 16S rRNA gene were used to study the dynamics of the bacterial community along with the whole operation. The reactor was sampled along the operation to monitor its diversity and the changes in targeted species to gain insight into the performance of the sulfidogenic UASB. Moreover, studies on the stratification of the sludge bed were performed by sampling at different reactor heights. Shifts in the UASB performance correlated well with the main shifts in microbial communities of interest. A progressive loss of the methanogenic capacity towards a fully sulfidogenic UASB was explained by a progressive wash-out of methanogenic Archaea, which were outcompeted by sulfate-reducing bacteria. Desulfovibrio was found as the main sulfate-reducing genus in the reactor along time. A progressive reduction in the sulfidogenic capacity of the UASB was found in the long run due to the accumulation of a slime-like substance in the UASB.


2021 ◽  
pp. 130217
Author(s):  
Betül Yesiltas ◽  
Simon Gregersen ◽  
Linea Lægsgaard ◽  
Maja L. Brinch ◽  
Tobias H. Olsen ◽  
...  

Author(s):  
Marc Tamisier ◽  
Matthias Schmidt ◽  
Carsten Vogt ◽  
Steffen Kümmel ◽  
Hryhoriy Stryhanyuk ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document