Refining numerical approaches for analyzing soil microbial community catabolic profiles based on carbon source utilization patterns

2006 ◽  
Vol 38 (3) ◽  
pp. 629-632 ◽  
Author(s):  
Robert L. Bradley ◽  
Bill Shipley ◽  
Carole Beaulieu
2012 ◽  
Vol 58 (No. 7) ◽  
pp. 295-301 ◽  
Author(s):  
W. Liu ◽  
N. Pan ◽  
W. Chen ◽  
W. Jiao ◽  
M. Wang

Effects of oxytetracycline (OTC) on the functional diversity of soil microbial community with or without vegetation were analyzed in a 7-week greenhouse pot experiment by use of Biolog-Eco plate. Results showed that along with the increase of OTC, average well color development (AWCD) values increased with the peak at 200 ppm OTC, and the utilization of sugar and its derivatives enhanced. The Shannon diversity and the evenness under different OTC levels followed a general order of red amaranth treatments > white clover treatments > no vegetation. The OTC treatments can be distinguished by two principle components. Our findings suggested that OTC addition stimulated soil microbial activities and vegetation changed carbon source utilization pattern at a certain content.  


PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9117 ◽  
Author(s):  
Peng Zhang ◽  
Zhiyi Cui ◽  
Mengqing Guo ◽  
Ruchun Xi

Characterizing soil microbial community is important for forest ecosystem management and microbial utilization. The microbial community in the soil beneath Camellia oleifera, an important woody edible oil tree in China, has not been reported before. Here, we used Illumina sequencing of 16S and ITS rRNA genes to study the species diversity of microorganisms in C. oleifera forest land in South China. The results showed that the rhizosphere soil had higher physicochemical properties, enzyme activities and microbial biomass than did the non-rhizosphere soil. The rhizosphere soil microorganisms had a higher carbon source utilization capacity than the non-rhizosphere soil microorganisms, and attained the highest utilization capacity in summer. The soil microbial community of C. oleifera was characterized by rich ester and amino acid carbon sources that played major roles in the principal functional components of the community. In summer, soil microbes were abundant in species richness and very active in community function. Rhizosphere microorganisms were more diverse than non-root systems in species diversity, which was associated with soil pH, Available phosphorous (AP) and Urease (URE). These results indicated that microbial resources were rich in rhizosphere soil. A priority should be given to the rhizosphere microorganisms in the growing season in developing and utilizing soil microorganisms in C. oleifera plantation. It is possible to promote the growth of C. oleifera by changing soil microbial community, including carbon source species, pH, AP, and URE. Our findings provide valuable information to guide microbial isolation and culturing to manage C. oleifera land.


1998 ◽  
Vol 64 (10) ◽  
pp. 4062-4064 ◽  
Author(s):  
Lynne Carpenter-Boggs ◽  
Ann C. Kennedy ◽  
John P. Reganold

ABSTRACT Carbon source utilization and phospholipid fatty acid analyses were used to track the rapidly changing microbial community in composting dairy waste. Microbial abilities to utilize common plant sugars increased during composting. Community phospholipid profiles changed significantly over time. Phospholipids suggested the presence of more thermophiles and fewer bacteria with continued compost development.


Author(s):  
Bo Wang ◽  
Ling Zhu ◽  
Tao Yang ◽  
Zhuangzhuang Qian ◽  
Cheng Xu ◽  
...  

Agroforestry systems provide soil microorganisms with a rich variety of carbon sources and a relatively stable living environment. In this study, five planting systems were investigated; a pure poplar (Populus × euramericana ‘Nanlin 895’) plantation (P) system, a pure crop (wheat [Triticum aestivum L.] and soybean [Glycine max (Linn.) Merr.]) (WS) system, a poplar + wheat + soybean agroforestry (PWS) system, a poplar + potherb mustard (Brassica juncea var. multiceps) agroforestry (PP) system, and a poplar + native chicken agroforestry (PN) system. The Biolog EcoPlate method was used to determine the vertical and seasonal variations in soil microbial metabolic capacity. The average well color development, carbon source utilization ability, and microbial diversity index values were higher throughout the soil profile, and highly stable with seasonal changes in the PWS and PP agroforestry systems. Furthermore, the influence of the planting systems and seasonal changes on the metabolic activity of soil microorganisms decreased with an increase in soil depth. Overbreeding chickens in the forest reduced the metabolic activity of soil microorganisms. It was also found that plants influenced soil microbial metabolism through the available carbon source types. Therefore, agroforestry systems improved the metabolic potential of the soil microbial community. Our results demonstrated that soil microbial communities are affected by the planting system and soil depth. The findings enhance our understanding of the functional diversity of soil microorganisms in agroforestry systems.


2018 ◽  
Vol 51 (2) ◽  
Author(s):  
Muhammad Razaq ◽  
Muhammad Sajjad Haider ◽  
Salah Uddin ◽  
Liu Chunping ◽  
Hai-Long Shen ◽  
...  

2002 ◽  
Vol 66 (3) ◽  
pp. 826 ◽  
Author(s):  
Søren O. Petersen ◽  
Pamela S. Frohne ◽  
Ann C. Kennedy

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