Interaction of Ia and IIa group cations with the guanine site in cytosine-guanine nucleic acid base pair: an ab initio Hartree Fock study in the absence of basis set superposition error

Effects of hydrated Mg++ interacting with the guanine site in cytosine–guanine nucleic acid–base pair: an ab initio Hartree–Fock study in the absence of basis set superposition error

Journal of Molecular Structure THEOCHEM ◽

10.1016/s0166-1280(00)00548-0 ◽

2000 ◽

Vol 529 (1-3) ◽

pp. 209-217 ◽

Cited By ~ 4

Author(s):

A. Famulari ◽

F. Moroni ◽

M. Sironi ◽

E. Gianinetti ◽

M. Raimondi

Keyword(s):

Nucleic Acid ◽

Ab Initio ◽

Base Pair ◽

Basis Set ◽

Acid Base ◽

Basis Set Superposition Error ◽

Hartree Fock ◽

New Trends in Quantum Systems in Chemistry and Physics - Progress in Theoretical Chemistry and Physics ◽

Hartree-fock Study of Hydrogen-bonded Systems in the Absence of Basis-set Superposition Error the Nucleic-acid Base Pairs

10.1007/0-306-46951-0_16 ◽

2005 ◽

pp. 313-333

Author(s):

A. Famulari ◽

M. Sironi ◽

E. Gianinetti ◽

M. Raimondi

Keyword(s):

Nucleic Acid ◽

Basis Set ◽

Acid Base ◽

Base Pairs ◽

Basis Set Superposition Error ◽

Hartree Fock ◽

Nucleic Acid Base ◽

Hydrogen Bonded Systems ◽

Nature of Nucleic Acid−Base Stacking: Nonempirical ab Initio and Empirical Potential Characterization of 10 Stacked Base Dimers. Comparison of Stacked and H-Bonded Base Pairs

The Journal of Physical Chemistry ◽

10.1021/jp953306e ◽

1996 ◽

Vol 100 (13) ◽

pp. 5590-5596 ◽

Cited By ~ 271

Author(s):

Jiří Šponer ◽

Jerzy Leszczyński ◽

Pavel Hobza

Keyword(s):

Nucleic Acid ◽

Ab Initio ◽

Base Stacking ◽

Acid Base ◽

Base Pairs ◽

Empirical Potential ◽

A standard reference frame for the description of nucleic acid base-pair geometry 1 1Edited by P. E. Wright 2 2This is a document of the Nomenclature Committee of IUBMB (NC-IUBMB)/IUPAC-IUBMB Joint Commission on Biochemical Nomenclature (JCBN), whose members are R. Cammack (chairman), A. Bairoch, H.M. Berman, S. Boyce, C.R. Cantor, K. Elliott, D. Horton, M. Kanehisa, A. Kotyk, G.P. Moss, N. Sharon and K.F. Tipton.

Journal of Molecular Biology ◽

10.1006/jmbi.2001.4987 ◽

2001 ◽

Vol 313 (1) ◽

pp. 229-237 ◽

Cited By ~ 371

Author(s):

Wilma K Olson ◽

Manju Bansal ◽

Stephen K Burley ◽

Richard E Dickerson ◽

Mark Gerstein ◽

...

Keyword(s):

Nucleic Acid ◽

Reference Frame ◽

Base Pair ◽

Joint Commission ◽

Acid Base ◽

Nomenclature Committee ◽

Biochemical Nomenclature ◽

ChemInform Abstract: Synthesis and X-Ray Crystal Structure of a Novel Tetrathiafulvalene Dimethyl(2,4-dioxo(1H,3H)pyrimido)tetrathiafulvalene, Able to Form Intermolecular Hydrogen Bonds of Nucleic Acid Base-Pair Type.

ChemInform ◽

10.1002/chin.199527161 ◽

2010 ◽

Vol 26 (27) ◽

pp. no-no

Author(s):

O. NEILANDS ◽

S. BELYAKOV ◽

V. TILIKA ◽

A. EDZINA

Keyword(s):

Crystal Structure ◽

Nucleic Acid ◽

Hydrogen Bonds ◽

Base Pair ◽

Pair Type ◽

Acid Base ◽

Intermolecular Hydrogen Bonds ◽

X Ray ◽

Flexibly capped β-cyclodextrins by the hydrogen-bonded nucleic acid base pair. The pH-control of binding ability by an on-off-switched capping

Tetrahedron Letters ◽

10.1016/s0040-4039(00)98325-4 ◽

1985 ◽

Vol 26 (14) ◽

pp. 1735-1738 ◽

Cited By ~ 7

Author(s):

Katuyuki Nagai ◽

Shigeo Ukal ◽

Kenji Hayakawa ◽

Ken Kanematsu

Keyword(s):

Nucleic Acid ◽

Base Pair ◽

Ph Control ◽

Acid Base ◽

Binding Ability ◽

Nucleic Acid Base ◽

Nucleobase difunctionalized .beta.-cyclodextrins. Preparation and spectral observation of base stacking and the hydrogen-bonded nucleic acid base pair

The Journal of Organic Chemistry ◽

10.1021/jo00371a003 ◽

1986 ◽

Vol 51 (21) ◽

pp. 3931-3939 ◽

Cited By ~ 8

Author(s):

Katsuyuki Nagai ◽

Kenji Hayakawa ◽

Shigeo Ukai ◽

Ken Kanematsu

Keyword(s):

Nucleic Acid ◽

Base Pair ◽

Spectral Observation ◽

Base Stacking ◽

Acid Base ◽

Nucleic Acid Base ◽

Calculating stacking interactions in nucleic acid base-pair steps using spin-component scaling and local second order Møller–Plesset perturbation theory

Physical Chemistry Chemical Physics ◽

10.1039/b718691f ◽

2008 ◽

Vol 10 (19) ◽

pp. 2785 ◽

Cited By ~ 40

Author(s):

J. Grant Hill ◽

James A. Platts

Keyword(s):

Perturbation Theory ◽

Nucleic Acid ◽

Base Pair ◽

Second Order ◽

Spin Component ◽

Stacking Interactions ◽

Acid Base ◽

Nucleic Acid Base ◽

Moller Plesset ◽

Plesset Perturbation Theory

Hydrogen-Bonded Nucleic Acid Base Pairs Containing Unusual Base Tautomers: Complete Basis Set Calculations at the MP2 and CCSD(T) Levels

The Journal of Physical Chemistry B ◽

10.1021/jp0661692 ◽

2007 ◽

Vol 111 (3) ◽

pp. 641-645 ◽

Cited By ~ 20

Author(s):

Jaroslav Rejnek ◽

Pavel Hobza

Keyword(s):

Nucleic Acid ◽

Basis Set ◽

Acid Base ◽

Base Pairs ◽

Complete Basis ◽

Nucleic Acid Base ◽

Complete Basis Set ◽

2,6-Diaminopyridine derivatives as models of molecular sensor for nucleic acid base detection: ab initio calculations of electronic effects induced by hydrogen bonds formation

Biosensors and Bioelectronics ◽

10.1016/j.bios.2004.04.031 ◽

2005 ◽

Vol 20 (7) ◽

pp. 1452-1457 ◽

Cited By ~ 7

Author(s):

Seiji Tsuzuki ◽

Yuji Kawanishi ◽

Shuji Abe

Keyword(s):

Nucleic Acid ◽

Hydrogen Bonds ◽

Ab Initio Calculations ◽

Ab Initio ◽

Electronic Effects ◽

Acid Base ◽

Molecular Sensor ◽