The ycf27 genes from cyanobacteria and eukaryotic algae: distribution and implications for chloroplast evolution

2002 ◽  
Vol 214 (1) ◽  
pp. 25-30 ◽  
Author(s):  
M Ashby
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jiawei Zhou ◽  
Shuo Zhang ◽  
Jie Wang ◽  
Hongmei Shen ◽  
Bin Ai ◽  
...  

AbstractThe chloroplast is one of two organelles containing a separate genome that codes for essential and distinct cellular functions such as photosynthesis. Given the importance of chloroplasts in plant metabolism, the genomic architecture and gene content have been strongly conserved through long periods of time and as such are useful molecular tools for evolutionary inferences. At present, complete chloroplast genomes from over 4000 species have been deposited into publicly accessible databases. Despite the large number of complete chloroplast genomes, comprehensive analyses regarding genome architecture and gene content have not been conducted for many lineages with complete species sampling. In this study, we employed the genus Populus to assess how more comprehensively sampled chloroplast genome analyses can be used in understanding chloroplast evolution in a broadly studied lineage of angiosperms. We conducted comparative analyses across Populus in order to elucidate variation in key genome features such as genome size, gene number, gene content, repeat type and number, SSR (Simple Sequence Repeat) abundance, and boundary positioning between the four main units of the genome. We found that some genome annotations were variable across the genus owing in part from errors in assembly or data checking and from this provided corrected annotations. We also employed complete chloroplast genomes for phylogenetic analyses including the dating of divergence times throughout the genus. Lastly, we utilized re-sequencing data to describe the variations of pan-chloroplast genomes at the population level for P. euphratica. The analyses used in this paper provide a blueprint for the types of analyses that can be conducted with publicly available chloroplast genomes as well as methods for building upon existing datasets to improve evolutionary inference.


2000 ◽  
Vol 12 (4) ◽  
pp. 418-424 ◽  
Author(s):  
James A. Raymond ◽  
Christian H. Fritsen

Macromolecular substances that cause pitting and other modifications of growing ice crystals were found to be associated with cyanobacterial mats, eukaryotic algae and mosses from Ross Island and the McMurdo Dry Valleys, Antarctica. Ice-pitting activities were largely retained by dialysis membranes with molecular weight cut-offs of up to 300 kDa. Unlike most aqueous solutes, the ice-active molecules were not excluded from the ice phase during freezing. The ice-pitting activities of each of the samples tested was destroyed by exposure to temperatures between 45 and 65°C, suggesting that they have a protein component. Ice-active substances were not found in cyanobacteria or mosses from temperate climates, but ice-activity was found to be associated with mosses from cold habitats in North America. Although the function of the ice-active substances is not known, their apparent confinement to cold environments suggests that they have a cryoprotective role.


2016 ◽  
Author(s):  
Adam J. Campbell ◽  
Betzalel Massarano ◽  
Edwin D. Waddington ◽  
Stephen G. Warren

Abstract. During the Neoproterozoic, Earth experienced several climate excursions of extreme cold, often referred to as the Snowball Earth events. During these periods, thick flowing ice, referred to as sea glaciers, covered the entire planet’s oceans. In addition, there is evidence that photosynthetic eukaryotic algae survived during these periods. With thick sea glaciers covering the oceans, it is uncertain where these organisms survived. One hypothesis is that these algae survived in marine embayments hydrologically connected to the global ocean, where the flow of sea glacier could be resisted. In order for an embayment to act as a refugium, the invading sea glacier must not completely penetrate the embayment. Recent studies have shown that straight-sided, marine embayments could have prevented full sea-glacier penetration under a narrow range of climate conditions suitable for the Snowball Earth events. Here we test whether promontories, i.e. headlands emerging from a side shoreline, could further restrict sea-glacier flow. We use an ice-flow model, suitable for floating ice, to determine the flow of an invading sea glacier. We show that promontories can expand the range of climate conditions allowing refugia by resisting the flow of invading sea glaciers.


2003 ◽  
Vol 56 (3) ◽  
pp. 330-340 ◽  
Author(s):  
Claus Vogl ◽  
Jonathan Badger ◽  
Paul Kearney ◽  
Ming Li ◽  
Michael Clegg ◽  
...  

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