scholarly journals Generation of geometric interpolations of building types with deep variational autoencoders

2020 ◽  
Vol 6 ◽  
Author(s):  
Jaime de Miguel Rodríguez ◽  
Maria Eugenia Villafañe ◽  
Luka Piškorec ◽  
Fernando Sancho Caparrini

Abstract This work presents a methodology for the generation of novel 3D objects resembling wireframes of building types. These result from the reconstruction of interpolated locations within the learnt distribution of variational autoencoders (VAEs), a deep generative machine learning model based on neural networks. The data set used features a scheme for geometry representation based on a ‘connectivity map’ that is especially suited to express the wireframe objects that compose it. Additionally, the input samples are generated through ‘parametric augmentation’, a strategy proposed in this study that creates coherent variations among data by enabling a set of parameters to alter representative features on a given building type. In the experiments that are described in this paper, more than 150 k input samples belonging to two building types have been processed during the training of a VAE model. The main contribution of this paper has been to explore parametric augmentation for the generation of large data sets of 3D geometries, showcasing its problems and limitations in the context of neural networks and VAEs. Results show that the generation of interpolated hybrid geometries is a challenging task. Despite the difficulty of the endeavour, promising advances are presented.

2020 ◽  
Author(s):  
Adam Pond ◽  
Seongwon Hwang ◽  
Berta Verd ◽  
Benjamin Steventon

AbstractMachine learning approaches are becoming increasingly widespread and are now present in most areas of research. Their recent surge can be explained in part due to our ability to generate and store enormous amounts of data with which to train these models. The requirement for large training sets is also responsible for limiting further potential applications of machine learning, particularly in fields where data tend to be scarce such as developmental biology. However, recent research seems to indicate that machine learning and Big Data can sometimes be decoupled to train models with modest amounts of data. In this work we set out to train a CNN-based classifier to stage zebrafish tail buds at four different stages of development using small information-rich data sets. Our results show that two and three dimensional convolutional neural networks can be trained to stage developing zebrafish tail buds based on both morphological and gene expression confocal microscopy images, achieving in each case up to 100% test accuracy scores. Importantly, we show that high accuracy can be achieved with data set sizes of under 100 images, much smaller than the typical training set size for a convolutional neural net. Furthermore, our classifier shows that it is possible to stage isolated embryonic structures without the need to refer to classic developmental landmarks in the whole embryo, which will be particularly useful to stage 3D culture in vitro systems such as organoids. We hope that this work will provide a proof of principle that will help dispel the myth that large data set sizes are always required to train CNNs, and encourage researchers in fields where data are scarce to also apply ML approaches.Author summaryThe application of machine learning approaches currently hinges on the availability of large data sets to train the models with. However, recent research has shown that large data sets might not always be required. In this work we set out to see whether we could use small confocal microscopy image data sets to train a convolutional neural network (CNN) to stage zebrafish tail buds at four different stages in their development. We found that high test accuracies can be achieved with data set sizes of under 100 images, much smaller than the typical training set size for a CNN. This work also shows that we can robustly stage the embryonic development of isolated structures, without the need to refer back to landmarks in the tail bud. This constitutes an important methodological advance for staging organoids and other 3D culture in vitro systems. This work proves that prohibitively large data sets are not always required to train CNNs, and we hope will encourage others to apply the power of machine learning to their areas of study even if data are scarce.


1997 ◽  
Vol 32 (3) ◽  
pp. 637-658 ◽  
Author(s):  
Klaus L.E. Kaiser ◽  
Stefan P. Niculescu ◽  
Gerrit Schüürmann

Abstract Various aspects connected to the use of feed forward backpropagation neural networks to build multivariate QSARs based on large data sets containing considerable amounts of important information are investigated. Based on such a model and a 419 compound data set, the explicit equation of one of the resulting multivariate QSARs for the computation of toxicity to the fathead minnow is presented as function of measured Microtox, logarithms of molecular weight and octanol/water partition coefficient, and 48 other functional group and discrete descriptors.


2020 ◽  
pp. 0887302X2093119 ◽  
Author(s):  
Rachel Rose Getman ◽  
Denise Nicole Green ◽  
Kavita Bala ◽  
Utkarsh Mall ◽  
Nehal Rawat ◽  
...  

With the proliferation of digital photographs and the increasing digitization of historical imagery, fashion studies scholars must consider new methods for interpreting large data sets. Computational methods to analyze visual forms of big data have been underway in the field of computer science through computer vision, where computers are trained to “read” images through a process called machine learning. In this study, fashion historians and computer scientists collaborated to explore the practical potential of this emergent method by examining a trend related to one particular fashion item—the baseball cap—across two big data sets—the Vogue Runway database (2000–2018) and the Matzen et al. Streetstyle-27K data set (2013–2016). We illustrate one implementation of high-level concept recognition to map a fashion trend. Tracking trend frequency helps visualize larger patterns and cultural shifts while creating sociohistorical records of aesthetics, which benefits fashion scholars and industry alike.


Data pre-processing is the process of transforming the raw data into useful dataset. Data pre-processing is one of the most important phase of any machine learning model because the quality and efficiency of any machine learning model directly depends upon the data-set, if we skip this step and design a model with data sets containing missing values then the model we have designed will not be that efficient and will be inconsistent model. This paper describes the methodology for pre-processing the data in seven sequence of steps using python powerful libraries which are open source machine learning libraries that support both supervised and unsupervised learning like pandas is a high level data manipulation tool, scikit learn which provides various tools for model fitting, data pre-processing, model selection and many other utilities. These steps include dealing with missing value, categorical values, importing data sets etc. This analysis helps in cleaning and transforming the datasets which future applied to any learning model and produce a efficient machine learning model.


Author(s):  
Dhilsath Fathima.M ◽  
S. Justin Samuel ◽  
R. Hari Haran

Aim: This proposed work is used to develop an improved and robust machine learning model for predicting Myocardial Infarction (MI) could have substantial clinical impact. Objectives: This paper explains how to build machine learning based computer-aided analysis system for an early and accurate prediction of Myocardial Infarction (MI) which utilizes framingham heart study dataset for validation and evaluation. This proposed computer-aided analysis model will support medical professionals to predict myocardial infarction proficiently. Methods: The proposed model utilize the mean imputation to remove the missing values from the data set, then applied principal component analysis to extract the optimal features from the data set to enhance the performance of the classifiers. After PCA, the reduced features are partitioned into training dataset and testing dataset where 70% of the training dataset are given as an input to the four well-liked classifiers as support vector machine, k-nearest neighbor, logistic regression and decision tree to train the classifiers and 30% of test dataset is used to evaluate an output of machine learning model using performance metrics as confusion matrix, classifier accuracy, precision, sensitivity, F1-score, AUC-ROC curve. Results: Output of the classifiers are evaluated using performance measures and we observed that logistic regression provides high accuracy than K-NN, SVM, decision tree classifiers and PCA performs sound as a good feature extraction method to enhance the performance of proposed model. From these analyses, we conclude that logistic regression having good mean accuracy level and standard deviation accuracy compared with the other three algorithms. AUC-ROC curve of the proposed classifiers is analyzed from the output figure.4, figure.5 that logistic regression exhibits good AUC-ROC score, i.e. around 70% compared to k-NN and decision tree algorithm. Conclusion: From the result analysis, we infer that this proposed machine learning model will act as an optimal decision making system to predict the acute myocardial infarction at an early stage than an existing machine learning based prediction models and it is capable to predict the presence of an acute myocardial Infarction with human using the heart disease risk factors, in order to decide when to start lifestyle modification and medical treatment to prevent the heart disease.


2021 ◽  
Author(s):  
Junjie Shi ◽  
Jiang Bian ◽  
Jakob Richter ◽  
Kuan-Hsun Chen ◽  
Jörg Rahnenführer ◽  
...  

AbstractThe predictive performance of a machine learning model highly depends on the corresponding hyper-parameter setting. Hence, hyper-parameter tuning is often indispensable. Normally such tuning requires the dedicated machine learning model to be trained and evaluated on centralized data to obtain a performance estimate. However, in a distributed machine learning scenario, it is not always possible to collect all the data from all nodes due to privacy concerns or storage limitations. Moreover, if data has to be transferred through low bandwidth connections it reduces the time available for tuning. Model-Based Optimization (MBO) is one state-of-the-art method for tuning hyper-parameters but the application on distributed machine learning models or federated learning lacks research. This work proposes a framework $$\textit{MODES}$$ MODES that allows to deploy MBO on resource-constrained distributed embedded systems. Each node trains an individual model based on its local data. The goal is to optimize the combined prediction accuracy. The presented framework offers two optimization modes: (1) $$\textit{MODES}$$ MODES -B considers the whole ensemble as a single black box and optimizes the hyper-parameters of each individual model jointly, and (2) $$\textit{MODES}$$ MODES -I considers all models as clones of the same black box which allows it to efficiently parallelize the optimization in a distributed setting. We evaluate $$\textit{MODES}$$ MODES by conducting experiments on the optimization for the hyper-parameters of a random forest and a multi-layer perceptron. The experimental results demonstrate that, with an improvement in terms of mean accuracy ($$\textit{MODES}$$ MODES -B), run-time efficiency ($$\textit{MODES}$$ MODES -I), and statistical stability for both modes, $$\textit{MODES}$$ MODES outperforms the baseline, i.e., carry out tuning with MBO on each node individually with its local sub-data set.


1997 ◽  
Vol 1997 ◽  
pp. 143-143
Author(s):  
B.L. Nielsen ◽  
R.F. Veerkamp ◽  
J.E. Pryce ◽  
G. Simm ◽  
J.D. Oldham

High producing dairy cows have been found to be more susceptible to disease (Jones et al., 1994; Göhn et al., 1995) raising concerns about the welfare of the modern dairy cow. Genotype and number of lactations may affect various health problems differently, and their relative importance may vary. The categorical nature and low incidence of health events necessitates large data-sets, but the use of data collected across herds may introduce unwanted variation. Analysis of a comprehensive data-set from a single herd was carried out to investigate the effects of genetic line and lactation number on the incidence of various health and reproductive problems.


2019 ◽  
Vol 8 (2S11) ◽  
pp. 3523-3526

This paper describes an efficient algorithm for classification in large data set. While many algorithms exist for classification, they are not suitable for larger contents and different data sets. For working with large data sets various ELM algorithms are available in literature. However the existing algorithms using fixed activation function and it may lead deficiency in working with large data. In this paper, we proposed novel ELM comply with sigmoid activation function. The experimental evaluations demonstrate the our ELM-S algorithm is performing better than ELM,SVM and other state of art algorithms on large data sets.


Author(s):  
V. Suresh Babu ◽  
P. Viswanath ◽  
Narasimha M. Murty

Non-parametric methods like the nearest neighbor classifier (NNC) and the Parzen-Window based density estimation (Duda, Hart & Stork, 2000) are more general than parametric methods because they do not make any assumptions regarding the probability distribution form. Further, they show good performance in practice with large data sets. These methods, either explicitly or implicitly estimates the probability density at a given point in a feature space by counting the number of points that fall in a small region around the given point. Popular classifiers which use this approach are the NNC and its variants like the k-nearest neighbor classifier (k-NNC) (Duda, Hart & Stock, 2000). Whereas the DBSCAN is a popular density based clustering method (Han & Kamber, 2001) which uses this approach. These methods show good performance, especially with larger data sets. Asymptotic error rate of NNC is less than twice the Bayes error (Cover & Hart, 1967) and DBSCAN can find arbitrary shaped clusters along with noisy outlier detection (Ester, Kriegel & Xu, 1996). The most prominent difficulty in applying the non-parametric methods for large data sets is its computational burden. The space and classification time complexities of NNC and k-NNC are O(n) where n is the training set size. The time complexity of DBSCAN is O(n2). So, these methods are not scalable for large data sets. Some of the remedies to reduce this burden are as follows. (1) Reduce the training set size by some editing techniques in order to eliminate some of the training patterns which are redundant in some sense (Dasarathy, 1991). For example, the condensed NNC (Hart, 1968) is of this type. (2) Use only a few selected prototypes from the data set. For example, Leaders-subleaders method and l-DBSCAN method are of this type (Vijaya, Murthy & Subramanian, 2004 and Viswanath & Rajwala, 2006). These two remedies can reduce the computational burden, but this can also result in a poor performance of the method. Using enriched prototypes can improve the performance as done in (Asharaf & Murthy, 2003) where the prototypes are derived using adaptive rough fuzzy set theory and as in (Suresh Babu & Viswanath, 2007) where the prototypes are used along with their relative weights. Using a few selected prototypes can reduce the computational burden. Prototypes can be derived by employing a clustering method like the leaders method (Spath, 1980), the k-means method (Jain, Dubes, & Chen, 1987), etc., which can find a partition of the data set where each block (cluster) of the partition is represented by a prototype called leader, centroid, etc. But these prototypes can not be used to estimate the probability density, since the density information present in the data set is lost while deriving the prototypes. The chapter proposes to use a modified leader clustering method called the counted-leader method which along with deriving the leaders preserves the crucial density information in the form of a count which can be used in estimating the densities. The chapter presents a fast and efficient nearest prototype based classifier called the counted k-nearest leader classifier (ck-NLC) which is on-par with the conventional k-NNC, but is considerably faster than the k-NNC. The chapter also presents a density based clustering method called l-DBSCAN which is shown to be a faster and scalable version of DBSCAN (Viswanath & Rajwala, 2006). Formally, under some assumptions, it is shown that the number of leaders is upper-bounded by a constant which is independent of the data set size and the distribution from which the data set is drawn.


Sign in / Sign up

Export Citation Format

Share Document