A comparison of coral reef and coral community fish assemblages in Pacific Panama and environmental factors governing their structure

2008 ◽  
Vol 88 (7) ◽  
pp. 1331-1341 ◽  
Author(s):  
Sarah Benfield ◽  
Laura Baxter ◽  
Hector M. Guzman ◽  
James M. Mair
Keyword(s):  
Coral Reefs ◽  
Reef Fish ◽  
Fish Assemblages ◽  
Size Composition ◽  
Structural Features ◽  
Coral Community ◽  
Percentage Cover ◽  
Dimensional Scaling ◽  
Coral Communities ◽  
Habitat Variables

We compared the reef fish assemblages of two habitats, coral reefs and coral communities (rocky substratum with coral colonies), in the Las Perlas Archipelago in Pacific Panama and attempted to determine associations with habitat variables. We used a modified Atlantic and Gulf Rapid Reef Assessment (AGRRA) survey to record fish species and quadrat transects to determine benthic composition. Multivariate non-parametric multi-dimensional scaling (MDS) ordinations were performed in PRIMER and univariate correlations were used to determine relationships. The reef fish of coral communities were significantly more diverse and species rich than those of coral reefs. The two habitats had significantly different species and size composition, but trophic and family groups overlapped between habitats. Topography, exposure, and the percentage cover of branching and massive corals correlated significantly with differences in fish parameters. The reef fish assemblages of this region appear to be determined more by the larger scale structural features that characterize the two habitats than by features that vary over small scales within the habitats.

Spatial and temporal changes in reef fish assemblages on disturbed coral reefs, north Pacific coast of Costa Rica

2019 ◽  
Vol 40 (1) ◽  
pp. e12532
Author(s):  
Gustavo Arias‐Godínez ◽  
Carlos Jiménez ◽  
Carlos Gamboa ◽  
Jorge Cortés ◽  
Mario Espinoza ◽  
...  
Keyword(s):  
Costa Rica ◽  
Coral Reefs ◽  
Reef Fish ◽  
North Pacific ◽  
Pacific Coast ◽  
Fish Assemblages ◽  
Temporal Changes ◽  
Spatial And Temporal Changes

scholarly journals Comparison of Standard Caribbean Coral Reef Monitoring Protocols and Underwater Digital Photogrammetry to Characterize Hard Coral Species Composition, Abundance and Cover

2021 ◽  
Vol 8 ◽  
Author(s):  
Erick Barrera-Falcon ◽  
Rodolfo Rioja-Nieto ◽  
Roberto C. Hernández-Landa ◽  
Edgar Torres-Irineo
Keyword(s):  
Coral Reefs ◽  
New Technologies ◽  
Coral Cover ◽  
Coral Community ◽  
Caribbean Region ◽  
Digital Photogrammetry ◽  
Hard Coral ◽  
Coral Communities ◽  
Caribbean Coral Reef ◽  
Monitoring Protocols

The precise assessing and monitoring of coral reefs are necessary to address and understand the threats and changes in coral communities. With the development of new technologies and algorithms for image processing, new protocols like underwater photogrammetry are implemented to study these ecosystems. This study compares the main ecological metrics for reef condition assessment, obtained with an underwater digital photogrammetry protocol (UWP) and traditional sampling design simulations in coral reefs of the Cozumel Reefs National Park. Three orthomosaics (380 m2) per reef on six fringing reefs were constructed, and the hard coral community characterized using a Geographic Information System (GIS). The orthomosaics were also used as a basis to simulate transect lines and obtain data on the hard coral community according to the video transect (VT) protocol, point intercept (PIT) protocol, and the Atlantic and Gulf Rapid Reef Assessment (AGRRA) protocol. Higher colony abundance, species richness, and lower coral cover estimates (p < 0.05) were obtained with the UWP. This protocol was also sensitive to small sized species. All the sampling designs showed similar capability to identify dominant species in terms of colony abundance and coral cover. The VT, PIT, and AGGRA showed similar coral cover values (p > 0.05), which seems to indicate that these sampling designs overestimate this important metric. Our results will help to understand and integrate the observations obtained with UWP with long-term data obtained with commonly used monitoring protocols in the Caribbean region.

scholarly journals Evaluating the efficacy of management zones in the FKNMS: Integrating visual and photogrammetric surveys, and passive acoustics to characterize reef fish assemblages and spawning activity across coral reef management regimes

2018 ◽  
Author(s):  
Kayelyn Simmons ◽  
DelWayne Bohnenstiehl ◽  
David Eggleston
Keyword(s):  
Coral Reefs ◽  
Reef Fish ◽  
Wildlife Conservation ◽  
Fish Assemblages ◽  
Marine Reserve ◽  
Florida Keys ◽  
Marine Ecology ◽  
Reef Management ◽  
Passive Acoustics ◽  
Low Frequencies

New technological approaches in marine ecology, such as (1) passive acoustics to characterize underwater soundscapes, and (2) habitat photogrammetry, which provides high-res, 3D images of habitats, can facilitate efficient and accurate assessments of coral reefs. In collaboration with the Florida Fish & Wildlife Conservation Commission (FWCC) and NOAA’s National Marine Sanctuary Program (NMSP), multidisciplinary, non-invasive research approaches provide transformative ways to characterize reef fish biodiversity as well as the ecological function of essential, hard-bottom habitats. The Florida Keys National Marine Sanctuary (FKNMS) is an ideal study system due to several replicate marine reserve types in addition to existing historical data on reef fish and benthic communities. Underwater soundscape results show significantly different spectral patterns for each site, such that protected sites displayed higher average spectra in low frequencies than fished sites. Additionally, species and family-specific fish chorusing was identified during crepuscular hours at several protected sites. Photogrammetry surveys produced a 3D elevation model used to characterize differences in coral composition contributing to vertical relief. Initial results suggest biodiversity and other ecosystem metrics generally increase with level of protection. These data provide critical baseline evaluations for Post- Hurricane Irma impacts and may assist in monitoring the recovery of coral reefs.

scholarly journals Volatility in coral cover erodes niche structure, but not diversity, in reef fish assemblages

2021 ◽  
Author(s):  
Cheng-Han Tsai ◽  
Hugh PA Sweatman ◽  
Löic M Thibaut ◽  
Sean R Connolly
Keyword(s):  
Coral Reefs ◽  
Reef Fish ◽  
Fish Assemblages ◽  
Environmental Gradients ◽  
Coral Cover ◽  
Species Abundance ◽  
Alpha Diversity ◽  
Deterministic Processes ◽  
Diversity Systems ◽  
Commonness And Rarity

Environmental fluctuations are becoming increasingly volatile in many ecosystems, highlighting the need to better understand how stochastic and deterministic processes shape patterns of commonness and rarity, particularly in high-diversity systems like coral reefs. Here, we analyse reef fish time-series across the Great Barrier Reef to show that approximately 75% of the variance in relative species abundance is attributable to deterministic, intrinsic species differences. Nevertheless, the relative importance of stochastic factors is markedly higher on reefs that have experienced stronger coral cover volatility. By contrast, alpha diversity and species composition are independent of coral cover volatility but depend on environmental gradients. Our findings imply that increased environmental volatility on coral reefs erodes assemblage's niche structure, an erosion that is not detectable from static measures of biodiversity.

scholarly journals KESESUAIAN EKOSISTEM TERUMBU KARANG UNTUK KEGIATAN WISATA SELAM DI NUSA LEMBONGAN, BALI

2021 ◽  
Vol 15 (1) ◽  
pp. 1
Author(s):  
Made Ayu Pratiwi ◽  
Ni Made Ernawati ◽  
Ni Putu Putri Wijayanti
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Reef Fish ◽  
Human Activities ◽  
Economic Benefits ◽  
Coral Community ◽  
Observation Point ◽  
Coral Reef Ecosystem ◽  
Suitability Index ◽  
Reef Ecosystem

Nusa Lembongan islands, Bali have a potential of coral reef diversity. Coral reefs have both ecological and high economic potential so that they are widely used. The economic benefits of coral reefs make these ecosystems very vulnerable to pressure from human activities. One of these human activities is the use of coral reefs in diving tourism activities. This research aimed to determine suitability and carrying capacity of coral reef ecosystem on Nusa Lembongan Island so that it can be recommended to manage coral reef ecosystem strategies to support the use of diving tourism. This study was conducted on six dive sites as observation points Observations on coral reef ecosystems were carried out using the intercept transect (LIT) method, and reef fish observation was carried out using the fish visual census method. Water quality sampling will be done in situ. Diving suitability was carried out by estimating the tourist suitability index (IKW) of six parameters, namely the brightness of the waters, coral community cover, coral life form, reef fish species, coral reef depth and current. The tourism suitability index value for the diving tourism category obtained was 74.07% (Jack Mangrove); 57.41% (Crystal Bay); and 61.11% (Manta Bay). The value for each observation point is included in the appropriate category of 50% -75%. It can be interpreted, that all observation points which are dive sites in Nusa Lembongan have supported diving tourism activities.Keywords: Tourism Suitability Index; Diving; Nusa lembongan.

scholarly journals Evaluating the efficacy of management zones in the FKNMS: Integrating visual and photogrammetric surveys, and passive acoustics to characterize reef fish assemblages and spawning activity across coral reef management regimes

2018 ◽  
Author(s):  
Kayelyn Simmons ◽  
DelWayne Bohnenstiehl ◽  
David Eggleston
Keyword(s):  
Coral Reefs ◽  
Reef Fish ◽  
Wildlife Conservation ◽  
Fish Assemblages ◽  
Marine Reserve ◽  
Florida Keys ◽  
Marine Ecology ◽  
Reef Management ◽  
Passive Acoustics ◽  
Low Frequencies

New technological approaches in marine ecology, such as (1) passive acoustics to characterize underwater soundscapes, and (2) habitat photogrammetry, which provides high-res, 3D images of habitats, can facilitate efficient and accurate assessments of coral reefs. In collaboration with the Florida Fish & Wildlife Conservation Commission (FWCC) and NOAA’s National Marine Sanctuary Program (NMSP), multidisciplinary, non-invasive research approaches provide transformative ways to characterize reef fish biodiversity as well as the ecological function of essential, hard-bottom habitats. The Florida Keys National Marine Sanctuary (FKNMS) is an ideal study system due to several replicate marine reserve types in addition to existing historical data on reef fish and benthic communities. Underwater soundscape results show significantly different spectral patterns for each site, such that protected sites displayed higher average spectra in low frequencies than fished sites. Additionally, species and family-specific fish chorusing was identified during crepuscular hours at several protected sites. Photogrammetry surveys produced a 3D elevation model used to characterize differences in coral composition contributing to vertical relief. Initial results suggest biodiversity and other ecosystem metrics generally increase with level of protection. These data provide critical baseline evaluations for Post- Hurricane Irma impacts and may assist in monitoring the recovery of coral reefs.

Fishes on coral reefs: changing roles over the past 240 million years

Paleobiology ◽  
2010 ◽  
Vol 36 (3) ◽  
pp. 415-427 ◽  
Author(s):  
Christopher H. R. Goatley ◽  
David R. Bellwood ◽  
Orpha Bellwood
Keyword(s):  
Coral Reefs ◽  
Reef Fish ◽  
Morphological Traits ◽  
Fish Assemblages ◽  
Lower Jaw ◽  
Nocturnal Feeding ◽  
Fossil Fish ◽  
Changing Roles ◽  
Fossil Reef ◽  
Over Time

Key morphological traits reveal changes in functional morphospace occupation of reef fish assemblages over time. We used measurements of key functional attributes (i.e., lower jaw length and orbit diameter) of 208 fossil fish species from five geological periods to create bivariate plots of functional morphological traits through time. These plots were used to examine possible function and ecological characteristics of fossil reef fish assemblages throughout the Mesozoic and Cenozoic. A previously unknown trend of increasing orbit diameter over time became apparent. The Teleostei are the principal drivers of this change. The Eocene appears to mark a dramatic increase in two previously rare feeding modes in fishes: nocturnal feeding and high-precision benthic feeding. Interestingly, members of the Pycnodontiformes had relatively large eyes since the Triassic and appear to be the ecological precursors of their later teleost counterparts and may have been among the earliest nocturnal feeding fishes. Our results highlight potential changes in the roles of fishes on coral reefs through time.

scholarly journals Incorporating reef fish avoidance behavior improves accuracy of species distribution models

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9246
Author(s):  
Kostantinos A. Stamoulis ◽  
Jade M.S. Delevaux ◽  
Ivor D. Williams ◽  
Alan M. Friedlander ◽  
Jake Reichard ◽  
...  
Keyword(s):  
Reef Fish ◽  
Species Distribution ◽  
Avoidance Behavior ◽  
Species Distribution Models ◽  
Fish Assemblages ◽  
Reef Fishes ◽  
Distribution Models ◽  
Approach Distance ◽  
Fish Avoidance ◽  
Habitat Variables

Species distribution models (SDMs) are used to interpret and map fish distributions based on habitat variables and other drivers. Reef fish avoidance behavior has been shown to vary in the presence of divers and is primarily driven by spearfishing pressure. Diver avoidance behavior or fish wariness may spatially influence counts and other descriptive measures of fish assemblages. Because fish assemblage metrics are response variables for SDMs, measures of fish wariness may be useful as predictors in SDMs of fishes targeted by spearfishing. We used a diver operated stereo-video system to conduct fish surveys and record minimum approach distance (MAD) of targeted reef fishes inside and outside of two marine reserves on the island of Oʻahu in the main Hawaiian Islands. By comparing MAD between sites and management types we tested the assumption that it provides a proxy for fish wariness related to spearfishing pressure. We then compared the accuracy of SDMs which included MAD as a predictor with SDMs that did not. Individual measures of MAD differed between sites though not management types. When included as a predictor, MAD averaged at the transect level greatly improved the accuracy of SDMs of targeted fish biomass.

scholarly journals Unravelling Seascape Patterns of Cryptic Life Stages: Non-Reef Habitat Use in Juvenile Parrotfishes

Diversity ◽  
2020 ◽  
Vol 12 (10) ◽  
pp. 376
Author(s):  
Katie T. Sievers ◽  
Rene A. Abesamis ◽  
Abner A. Bucol ◽  
Garry R. Russ
Keyword(s):  
Coral Reef ◽  
Coral Reefs ◽  
Reef Fish ◽  
Coral Reef Fish ◽  
Dna Analysis ◽  
Fish Assemblages ◽  
Juvenile Fish ◽  
The Philippines ◽  
Integral Group ◽  
Underwater Visual Census

Juvenile fish often use alternative habitats distinct from their adult phases. Parrotfishes are an integral group of coral reef fish assemblages, are targeted in fisheries, are sensitive to reef disturbances, and have been documented as multiple-habitat users. Considering the abundance of research conducted on parrotfishes, very little is known about their juvenile ecology at the species level due to their cryptic and variable coloration patterns. We collected juvenile parrotfishes in non-reef habitats (macroalgal beds, seagrass beds, and lagoons) in the Philippines and used DNA analysis to determine species composition. The results were then compared with data on adult parrotfish abundance from underwater visual census (UVC) surveys in coral reef and non-reef habitats. Collections identified 15 species of juvenile parrotfishes in non-reef habitats, and of these, 10 were also recorded in UVCs as adults. Informed by adult surveys, 42% of the 19 parrotfish species observed as adults were classified as multi-habitat users based on their presence in coral reef and non-reef habitats. When accounting for the occurrence of species as juveniles in non-reef habitats, 93% of the species collected as juveniles would be considered multi-habitat users. Species identified as juveniles in non-reef habitats comprised 50% of the average adult parrotfish density on coral reefs and 58–94% in non-reef habitats. The species richness of juveniles in non-reef habitats was greater than that of adults occupying the same habitats, and the most common adult species observed in UVCs was not collected as juveniles in non-reef habitats. Finally, UVC suggested that 97% of juvenile parrotfish <10-cm total length was present in non-reef habitats compared to coral reefs. These results provide further evidence for ontogenetic movement across habitat boundaries for parrotfish species in a diverse and highly connected tropical seascape. This is one of the few studies to quantify links between nursery and adult habitat in parrotfishes, highlighting the importance of including non-reef habitats in ecological studies of an iconic group of coral reef fish.

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