Nearest-Neighbor Effects Modulate loxP Spacer DNA Chemical Shifts and Guide Oligonucleotide Design for Nuclear Magnetic Resonance Studies

Biochemistry ◽  
2022 ◽  
Author(s):  
Nicole Wagner ◽  
Mark P. Foster
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Nearest Neighbor ◽  
Chemical Shifts ◽  
Magnetic Resonance Studies ◽  
Neighbor Effects ◽  
Spacer Dna ◽  
Nuclear Magnetic

Studies of specifically fluorinated carbohydrates. Part I. Nuclear magnetic resonance studies of hexopyranosyl fluoride derivatives

1969 ◽  
Vol 47 (1) ◽  
pp. 1-17 ◽  
Author(s):  
L. D. Hall ◽  
J. F. Manville ◽  
N. S. Bhacca
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Angular Dependence ◽  
Chemical Shifts ◽  
Relative Orientation ◽  
Coupling Constants ◽  
Pyranose Ring ◽  
Spectral Parameters ◽  
Magnetic Resonance Studies ◽  
Nuclear Magnetic

A detailed study has been made of both the 1H and 19F nuclear magnetic resonance (n.m.r.) spectra of a series of hexopyranosyl fluoride derivatives. Some of the 1H spectra were measured at 220 MHz. The 1H spectral parameters define both the configuration and the conformation of each of these derivatives. Study of the 19F n.m.r. parameters revealed several stereospecific dependencies. The 19F chemical shifts depend upon, (a) the orientation of the fluorine substituent with respect to the pyranose ring and, (b) the relative orientation of other substituents attached to the ring; for acetoxy substituents, these configurational dependencies appear to be additive. The vicinal19F–1H coupling constants exhibit a marked angular dependence for which Jtrans = ca. 24 Hz whilst Jgauche = 1.0 to 1.5 Hz for [Formula: see text] and 7.5 to 12.6 Hz for [Formula: see text] The geminal19F–1H couplings depend on the orientation of the substituent at C-2; when this substituent is equatorial JF,H is ca. 53.5 Hz and when it is axial the value is ca. 49 Hz.

Studies of specifically fluorinated carbohydrates. Part II. Nuclear magnetic resonance studies of pentopyranosyl fluoride derivatives

1969 ◽  
Vol 47 (1) ◽  
pp. 19-30 ◽  
Author(s):  
L. D. Hall ◽  
J. F. Manville
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Magnetic Resonance Spectroscopy ◽  
Nuclear Magnetic Resonance Spectroscopy ◽  
Chemical Shifts ◽  
Coupling Constants ◽  
Resonance Spectroscopy ◽  
Magnetic Resonance Studies ◽  
Conformational Model ◽  
Nuclear Magnetic

Detailed studies, by 1H and 19F nuclear magnetic resonance spectroscopy, of a series of fully esterified pentopyranosyl fluorides, show that all such derivatives favor that conformer in which the fluorine substituent is axially oriented. This conclusion is supported by separate considerations of the vicinal and geminal19F–1H and 1H–1H coupling constants, of the long-range (4J) 1H–1H and 19F–1H coupling constants and of the 19F chemical shifts. The limitations of the above conformational model are discussed.

Nuclear magnetic resonance studies. III. Rotational isomerism of some C-glucosylflavonoid acetates

1965 ◽  
Vol 18 (5) ◽  
pp. 715 ◽  
Author(s):  
RA Eade ◽  
WE Hillis ◽  
DHS Horn ◽  
JJH Simes
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Steric Hindrance ◽  
Chemical Shifts ◽  
Rotational Isomerism ◽  
Bulky Substituent ◽  
Temperature Dependent ◽  
Magnetic Resonance Studies ◽  
Rotational Isomers ◽  
Nuclear Magnetic

The temperature-dependent variations in the spectra of certain C-glucosyl-flavonoid acetates are attributed to the effect of steric hindrance of bulky substituent groups of the sugar and aromatic moieties on the rate of interconversion of the two rotational isomers present. The differences in the chemical shifts of the protons of the two isomers are attributed to differences in the orientation and position of the acetyl and phenyl groups.

Carbon-13 Nuclear Magnetic Resonance Studies of Some Methyl Substituted Diphenylmethanes

1974 ◽  
Vol 52 (18) ◽  
pp. 3196-3200 ◽  
Author(s):  
Gerald W. Buchanan ◽  
Giorgio Montaudo ◽  
Paolo Finocchiaro
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Chemical Shift ◽  
Ring Current ◽  
Chemical Shifts ◽  
Magnetic Resonance Studies ◽  
Nuclear Magnetic

Carbon-13 n.m.r. chemical shifts are reported for diphenylmethane and nine methylated derivatives. Results are compared with those for related methylbenzenes. In the case of tri-ortho-substituted materials the predominance of a perpendicular conformation is suggested. Ring current calculations show that in contrast to the 1H chemical shift interpretations, the 13C shielding trends cannot originate primarily from anisotropic effects.

Selenium-77 nuclear magnetic resonance studies. 3. Chemical shifts of ionic, N- and Se-coordinated selenocyanate

1980 ◽  
Vol 44 ◽  
pp. L95-L97 ◽  
Author(s):  
Wie-Hin Pan ◽  
John P. Fackler ◽  
Joseph A. Kargol ◽  
John L. Burmeister
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Chemical Shifts ◽  
Magnetic Resonance Studies ◽  
Nuclear Magnetic

Nuclear magnetic resonance studies of aqueous solutions of alkylureas: Proton and carbon-13 chemical shifts

1977 ◽  
Vol 6 (3) ◽  
pp. 117-127 ◽  
Author(s):  
Guido Barone ◽  
Giuseppina Castronuovo ◽  
Claudio Della Volpe ◽  
Vittorio Elia
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Aqueous Solutions ◽  
Chemical Shifts ◽  
Magnetic Resonance Studies ◽  
Nuclear Magnetic

NOTIZEN: Use of 95Mo NMR for Identification of Molybdenum (VI) Chalcogenide Anions in Aqueous Solution

1977 ◽  
Vol 32 (5) ◽  
pp. 505-506 ◽  
Author(s):  
O. Lutz ◽  
A. Nolle ◽  
P. Kroneck
Keyword(s):  
Aqueous Solution ◽  
Nuclear Magnetic Resonance ◽  
Fourier Transform ◽  
Magnetic Resonance ◽  
Aqueous Solutions ◽  
Chemical Shifts ◽  
Magnetic Resonance Studies ◽  
Nuclear Magnetic

Abstract95Mo Fourier transform nuclear magnetic resonance studies were made on aqueous solutions of oxo thiomolybdates. Chemical shifts up to 2200 ppm were found for the different unambiguously assigned species MoO4-nSn2- (n = 0, 1, 2, 3, 4).

Nuclear Magnetic Resonance Studies on Fluorides of Trivalent Phosphorus

1965 ◽  
Vol 20 (2) ◽  
pp. 104-109 ◽  
Author(s):  
G. S. Reddy ◽  
R. Schmutzler
Keyword(s):  
Nuclear Magnetic Resonance ◽  
Magnetic Resonance ◽  
Chemical Shifts ◽  
Coupling Constants ◽  
Trivalent Phosphorus ◽  
Magnetic Resonance Studies ◽  
Regular Change ◽  
Nuclear Magnetic Resonance Spectra ◽  
Multiple Substitution ◽  
Nuclear Magnetic

The P31, F19, and H1 nuclear magnetic resonance spectra of a new series of compounds of the types (RO)nPF3-n and (R2N)nPF3-n (n = 1,2) have been studied. A regular change in the chemical shifts and coupling constants has been observed with multiple substitution. The changes in the coupling constants have been explained on the basis of the electronegativity of the atoms attached to phosphorus. Some long-range coupling constants between hydrogen and fluorine separated by five bonds were observed.

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