Nearest-Neighbor Effects Modulate loxP Spacer DNA Chemical Shifts and Guide Oligonucleotide Design for Nuclear Magnetic Resonance Studies

Biochemistry ◽  
2022 ◽  
Author(s):  
Nicole Wagner ◽  
Mark P. Foster
1969 ◽  
Vol 47 (1) ◽  
pp. 1-17 ◽  
Author(s):  
L. D. Hall ◽  
J. F. Manville ◽  
N. S. Bhacca

A detailed study has been made of both the 1H and 19F nuclear magnetic resonance (n.m.r.) spectra of a series of hexopyranosyl fluoride derivatives. Some of the 1H spectra were measured at 220 MHz. The 1H spectral parameters define both the configuration and the conformation of each of these derivatives. Study of the 19F n.m.r. parameters revealed several stereospecific dependencies. The 19F chemical shifts depend upon, (a) the orientation of the fluorine substituent with respect to the pyranose ring and, (b) the relative orientation of other substituents attached to the ring; for acetoxy substituents, these configurational dependencies appear to be additive. The vicinal19F–1H coupling constants exhibit a marked angular dependence for which Jtrans = ca. 24 Hz whilst Jgauche = 1.0 to 1.5 Hz for [Formula: see text] and 7.5 to 12.6 Hz for [Formula: see text] The geminal19F–1H couplings depend on the orientation of the substituent at C-2; when this substituent is equatorial JF,H is ca. 53.5 Hz and when it is axial the value is ca. 49 Hz.


1969 ◽  
Vol 47 (1) ◽  
pp. 19-30 ◽  
Author(s):  
L. D. Hall ◽  
J. F. Manville

Detailed studies, by 1H and 19F nuclear magnetic resonance spectroscopy, of a series of fully esterified pentopyranosyl fluorides, show that all such derivatives favor that conformer in which the fluorine substituent is axially oriented. This conclusion is supported by separate considerations of the vicinal and geminal19F–1H and 1H–1H coupling constants, of the long-range (4J) 1H–1H and 19F–1H coupling constants and of the 19F chemical shifts. The limitations of the above conformational model are discussed.


1965 ◽  
Vol 18 (5) ◽  
pp. 715 ◽  
Author(s):  
RA Eade ◽  
WE Hillis ◽  
DHS Horn ◽  
JJH Simes

The temperature-dependent variations in the spectra of certain C-glucosyl-flavonoid acetates are attributed to the effect of steric hindrance of bulky substituent groups of the sugar and aromatic moieties on the rate of interconversion of the two rotational isomers present. The differences in the chemical shifts of the protons of the two isomers are attributed to differences in the orientation and position of the acetyl and phenyl groups.


1974 ◽  
Vol 52 (18) ◽  
pp. 3196-3200 ◽  
Author(s):  
Gerald W. Buchanan ◽  
Giorgio Montaudo ◽  
Paolo Finocchiaro

Carbon-13 n.m.r. chemical shifts are reported for diphenylmethane and nine methylated derivatives. Results are compared with those for related methylbenzenes. In the case of tri-ortho-substituted materials the predominance of a perpendicular conformation is suggested. Ring current calculations show that in contrast to the 1H chemical shift interpretations, the 13C shielding trends cannot originate primarily from anisotropic effects.


1977 ◽  
Vol 32 (5) ◽  
pp. 505-506 ◽  
Author(s):  
O. Lutz ◽  
A. Nolle ◽  
P. Kroneck

Abstract95Mo Fourier transform nuclear magnetic resonance studies were made on aqueous solutions of oxo thiomolybdates. Chemical shifts up to 2200 ppm were found for the different unambiguously assigned species MoO4-nSn2- (n = 0, 1, 2, 3, 4).


1965 ◽  
Vol 20 (2) ◽  
pp. 104-109 ◽  
Author(s):  
G. S. Reddy ◽  
R. Schmutzler

The P31, F19, and H1 nuclear magnetic resonance spectra of a new series of compounds of the types (RO)nPF3-n and (R2N)nPF3-n (n = 1,2) have been studied. A regular change in the chemical shifts and coupling constants has been observed with multiple substitution. The changes in the coupling constants have been explained on the basis of the electronegativity of the atoms attached to phosphorus. Some long-range coupling constants between hydrogen and fluorine separated by five bonds were observed.


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