GB Tags: Small Covalent Peptide Tags Based on Protein Fragment Reconstitution

Author(s):  
Ruidi Wang ◽  
Miao Liu ◽  
Han Wang ◽  
Jiang Xia ◽  
Hongbin Li
Nature ◽  
2006 ◽  
Author(s):  
Helen Pearson
Keyword(s):  

Author(s):  
Ying Zhai ◽  
Na Li ◽  
Dachuan Zhang ◽  
Qi Li ◽  
Guoping Zhou ◽  
...  

Virology ◽  
2021 ◽  
Vol 557 ◽  
pp. 15-22
Author(s):  
Teodora Djukic ◽  
Maja Mladenovic ◽  
Dragana Stanic-Vucinic ◽  
Jelena Radosavljevic ◽  
Katarina Smiljanic ◽  
...  

2007 ◽  
Vol 292 (6) ◽  
pp. G1641-G1649 ◽  
Author(s):  
Zuoliang Xiao ◽  
Frank Schmitz ◽  
Victor E. Pricolo ◽  
Piero Biancani ◽  
Jose Behar

Muscle cells from human gallbladders (GB) with cholesterol stones (ChS) exhibit a defective contraction, excess cholesterol (Ch) in the plasma membrane, and lower binding of CCK-1 receptors. These abnormalities improved after muscle cells were incubated with Ch-free liposomes that remove the excess Ch from the plasma membrane. The present studies were designed to investigate the role of caveolin-3 proteins (Cav-3) in the pathogenesis of these abnormalities. Muscle cells from GB with ChS exhibit higher Ch levels in the plasma membrane that were mostly localized in caveolae and associated with parallel increases in the expression of Cav-3 in the caveolae compared with that in GB with pigment stones (PS). The overall number of CCK-1 receptors in the plasma membrane was not different between muscle cells from GB with ChS and PS, but they were increased in the caveolae in muscle cells from GB with ChS. Treatment of muscle cells from GB with ChS with a Gαi3 protein fragment increased the total binding of CCK-1 receptors (from 8.3 to 11.2%) and muscle contraction induced by CCK-8 (from 11.2 to 17.3% shortening). However, Gαq/11 protein fragment had no such effect. Moreover, neither fragment had any effect on muscle cells from GB with PS. We conclude that the defective contraction of muscle cells with excessive Ch levels in the plasma membrane is due to an increased expression of Cav-3 that results in the sequestration of CCK-1 receptors in the caveolae, probably by inhibiting the functions of Gαi3 proteins.


Biochemistry ◽  
2004 ◽  
Vol 43 (50) ◽  
pp. 15873-15883 ◽  
Author(s):  
Christian Klein ◽  
Claire Gensburger ◽  
Solange Freyermuth ◽  
Bala C. Nair ◽  
Gérard Labourdette ◽  
...  

2016 ◽  
Vol 12 (6) ◽  
pp. 1731-1745 ◽  
Author(s):  
Jonathan Lotze ◽  
Ulrike Reinhardt ◽  
Oliver Seitz ◽  
Annette G. Beck-Sickinger

Peptide-tag based labelling can be achieved by (i) enzymes (ii) recognition of metal ions or small molecules and (iii) peptide–peptide interactions and enables site-specific protein visualization to investigate protein localization and trafficking.


2010 ◽  
Vol 10 (4-6) ◽  
pp. 709-724 ◽  
Author(s):  
ALESSANDRO DAL PALÙ ◽  
AGOSTINO DOVIER ◽  
FEDERICO FOGOLARI ◽  
ENRICO PONTELLI

AbstractThe paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments are extracted by a preprocessor—also developed for this work—from a database of known protein structures that clusters and classifies the fragments according to similarity and frequency. The problem of assembling fragments into a complete conformation is mapped to a constraint solving problem and solved using CLP. The constraint-based model uses a medium discretization degree Cα-side chain centroid protein model that offers efficiency and a good approximation for space filling. The approach and adapts existing energy models to the protein representation used and applies a large neighboring search strategy. The results shows the feasibility and efficiency of the method. The declarative nature of the solution allows to include future extensions, e.g., different size fragments for better accuracy.


Author(s):  
Maksymilian Marek Zegota ◽  
Michael Andreas Müller ◽  
Bellinda Lantzberg ◽  
Gönül Kizilsavas ◽  
Jaime A. S. Coelho ◽  
...  

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