How to Model Inter- and Intramolecular Hydrogen Bond Strengths with Quantum Chemistry

2019 ◽  
Vol 59 (9) ◽  
pp. 3735-3743
Author(s):  
Christoph A. Bauer
2018 ◽  
Vol 122 (43) ◽  
pp. 8505-8510 ◽  
Author(s):  
Jenna A. Hohl ◽  
Michael W. Harris ◽  
Nina Strasser ◽  
Anne-Marie Kelterer ◽  
Richard J. Lavrich

2020 ◽  
Vol 16 (2) ◽  
pp. 96-101
Author(s):  
Sheila Boreiko ◽  
Agnes T.P. Machado ◽  
Júlio C. Stiirmer ◽  
Jorge Iulek ◽  
Marcio Silva

Background: According to the World Health Organization (WHO), the routine use of antibiotics has led to the increase of microbial resistance. Thus, the search for new compounds that present antimicrobial activity must be constant. This study reports the bactericidal activity assay of the steviol derivative 17-hydroxy-16-hydroxyiminobayeran-19-oic acid against various bacteria and structural studies by quantum chemistry and molecular dynamics. Methods: Bactericidal activity assays of the steviol derivative 17-hydroxy-16-hydroxyiminobayeran-19- oic acid against Salmonella typhimurium [ATCC 14028], Staphylococcus aureus [ATCC 6538], Bacillus cereus [ATCC 11778], Helicobacter pylori [ATCC 26695], Pseudomonas aeruginosa [ATCC 27853], Escherichia coli [ATCC 25922] and Bacillus subtilis [ATCC 23857] were performed, as well as structural studies by quantum chemistry and molecular dynamics. Results: The results show that the compound exhibits activity towards S. typhimurium, what makes it an interesting compound for future studies on the development of antibiotics against this bacteria. An intramolecular hydrogen bond does not seem to be maintained in solution, therefore, corresponding moieties should be prone to interactions with their surroundings. Conclusions: The results indicate that the title compound exhibits activity towards S. typhimurium, what sums up to similar results from other steviol derivatives and stevioside, thus reinforcing the potential of these compounds for future studies on the development of antibiotics against this bacteria. The potential energy surface for the selected torsion angles and molecular dynamics have revealed that an intramolecular hydrogen bond, though slightly energetically favorable, does not seem to be maintained in solution; therefore, corresponding moieties should be prone to interactions with their surroundings, an important feature in further studies involving inhibitor/drug design from this compound.


Author(s):  
Reihaneh Heidarian ◽  
Mansoureh Zahedi-Tabrizi

: Leflunomide (LFM) and its active metabolite, teriflunomide (TFM), have drawn a lot of attention for their anticancer activities, treatment of rheumatoid arthritis and malaria due to their capability to inhibit dihydroorotate dehydrogenase (DHODH) and Plasmodium falciparum dihydroorotate dehydrogenase (PfDHODH) enzyme. In this investigation, the strength of intramolecular hydrogen bond (IHB) in five analogs of TFM (ATFM) has been analyzed employing density functional theory (DFT) using B3LYP/6-311++G (d, p) level and molecular orbital analysis in the gas phase and water solution. A detailed electronic structure study has been performed using the quantum theory of atoms in molecules (QTAIM) and the hydrogen bond energies (EHB) of stable conformer obtained in the range of 76-97 kJ/mol, as a medium hydrogen bond. The effect of substitution on the IHB nature has been studied by natural bond orbital analysis (NBO). 1H NMR calculations show an upward trend in the proton chemical shift of the enolic proton in the chelated ring (14.5 to 15.7ppm) by increasing the IHB strength. All the calculations confirmed the strongest IHB in 5-F-ATFM and the weakest IHB in 2-F-ATFM. Molecular orbital analysis, including the HOMO-LUMO gap and chemical hardness, was performed to compare the reactivity of inhibitors. Finally, molecular docking analysis was carried out to identify the potency of inhibition of these compounds against PfDHODH enzyme.


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