intermolecular hydrogen bond
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2021 ◽  
Vol 23 (1) ◽  
pp. 233
Author(s):  
Małgorzata Domagała ◽  
Sílvia Simon and Marcin Palusiak

In the presented research, we address the original concept of resonance-assisted hydrogen bonding (RAHB) by means of the many-body interaction approach and electron density delocalization analysis. The investigated molecular patterns of RAHBs are open chains consisting of two to six molecules in which the intermolecular hydrogen bond stabilizes the complex. Non-RAHB counterparts are considered to be reference systems. The results show the influence of the neighbour monomers on the unsaturated chains in terms of the many-body interaction energy contribution. Exploring the relation between the energy parameters and the growing number of molecules in the chain, we give an explicit extrapolation of the interaction energy and its components in the infinite chain. Electron delocalization within chain motifs has been analysed from three different points of view: three-body delocalization between C=C-C, two-body hydrogen bond delocalization indices and also between fragments (monomers). A many-body contribution to the interaction energy as well as electron density helps to establish the assistance of resonance in the strength of hydrogen bonds upon the formation of the present molecular chains. The direct relation between interaction energy and delocalization supports the original concept, and refutes some of the criticisms of the RAHB idea.


Author(s):  
Mbossé Ndiaye-Gueye ◽  
Amar Diop ◽  
Papa Aly Gaye ◽  
Ibrahima Elhadji Thiam ◽  
Farba Bouyagui Tamboura ◽  
...  

Herein we reported the binuclear complexes of the 1-(pyridin-2-yl)-2-(pyridin-2-ylmethylene)hydrazine ligand (HL) [Ln2(HL)2(CH3COO)6].n(H2O) (Ln = Y, Pr, Gd and Er). The binuclear complexes are characterized by IR and physical measurement. Spectroscopic evidence indicated that the Schiff base HL behave an N3 coordination tridentate ligand. The complexes are formulated as [{Ln(1-(pyridin-2-ylmethylidene-kN)-2-(pyridin-2-yl-kN)hydrazine-kN1)(h2-OOCH3)2}{h1:h2:m2-OOCH3}2{Ln(1-(pyridin-2-ylmethylidene-kN)-2-(pyridin-2-yl-kN)hydrazine-kN1))(h2-OOCH3)2}].n(H2O). The structure of the praseodymium complex was elucidated by X-ray diffraction analysis. Suitable crystals were grown by slow evaporation of methanol solution. The asymmetric unit of the compound contains two neutral ligand molecules, two Pr3+ ions, four acetate anions acting in h2-OOCH3 mode, two acetate anions acting in h1:h2:m2-OOCH3 mode, and three uncoordinated water molecules. The praseodymium atom is ten coordinated and the coordination sphere is best described as a distorted bicapped square antiprism. The PrIII···PrIII distance is 4.2777(6) Å and the bridging angle Pr—O—Pr and O—Pr—O are respectively 115.8(3)° and 64.2(3)°. The structure is consolidated by intra and intermolecular hydrogen bond.


Processes ◽  
2021 ◽  
Vol 9 (12) ◽  
pp. 2230
Author(s):  
Nontsikelelo Noxolo Tafu ◽  
Victoria A. Jideani

Moringa oleifera leaf powder (MOLP) has been identified as the most important functional ingredient owing to its rich nutritional profile and healthy effects. The solubility and functional properties of this ingredient can be enhanced through solid dispersion technology. This study aimed to investigate the effects of polyethylene glycols (PEGs) 4000 and 6000 as hydrophilic carriers and solid dispersion techniques (freeze-drying, melting, solvent evaporation, and microwave irradiation) on the crystallinity and thermal stability of solid-dispersed Moringa oleifera leaf powders (SDMOLPs). SDMOLPs were dully characterized using powder X-ray diffraction (PXRD), differential scanning calorimetry (DSC), thermo-gravimetric analysis (TGA), and Fourier transform infrared spectroscopy (FTIR). The PXRD results revealed that the solid dispersions were partially amorphous with strong diffraction peaks at 2θ values of 19° and 23°. The calorimetric and thermogravimetric curves showed that PEGs conferred greater stability on the dispersions. The FTIR studyrevealed the existence of strong intermolecular hydrogen bond interactions between MOLP and PEG functional groups. MOLP solid dispersions may be useful in functional foods and beverages and nutraceutical formulations.


2021 ◽  
Author(s):  
Mohammad R. Momeni ◽  
Dil K. Limbu ◽  
Sara Abdelhamid ◽  
Shaina Pearson ◽  
Farnaz A. Shakib

Most of chemistry in nanoporous materials with small pore sizes and windows is known to occur on the surface which is in immediate contact with substrate/solvent, rather than inside pores and channels. Here, we report the results of our comprehensive atomistic molecular dynamics simulations on deciphering the intermolecular hydrogen bond network of water on outer surface of a nanoparticle model of ZIF-8 vs. inner surfaces of its pristine crystalline bulk model. Using a finite ~5.1 nm nanoparticle model with edges containing under--coordinated Zn2+ metal sites we show that water exposed to the surface of the nanoparticle exhibits both interfacial and bulk-like characters. Furthermore, we illustrate that as water content increases larger droplets are formed with water molecules starting to diffuse into the nanopores. While the confined water in the crystalline bulk simulations is pushed to the vacant pores due to hydrophobic inner surfaces, the outer surface water molecules form chemical bonds with under--coordinated Zn2+ metal sites which act as nucleation sites for the water droplets to form and hence making the surface hydrophilic. By adapting a similar mechanism to the dangling linker defect formation mechanism, we probe the tendency of the outer surface of ZIF-8 nanoparticles to water attack and hydrolysis. Results presented in this work are useful in designing more robust materials for applications in humid environments.


2021 ◽  
Vol 11 (21) ◽  
pp. 10038
Author(s):  
Valeria Conti Nibali ◽  
Caterina Branca ◽  
Ulderico Wanderlingh ◽  
Giovanna D’Angelo

The vibrational signature in the far-infrared region of two different phospholipids, phosphatidylcholine (PC) and phosphatidylethanolamine (PE), was investigated as a function of relative humidity from 0 to 75% in order to evaluate the effect of headgroup composition on the formation of intermolecular interactions. The substructures of the frequency region between 50 and 300 cm−1 were identified, and changes in the frequency and intensity of the related vibrations with hydration were analyzed. Interestingly, in PE, two additional vibrational bands with respect to PC were found at 162 and 236 cm−1 and assigned to intermolecular hydrogen bonds between the hydrogen-bond-donating groups, -NH3+, and hydrogen-bond-accepting groups, —P—O− and —COO, of adjacent molecules. The presence of these interactions also affected the penetration of water, severely reducing the hydration capability of PE lipids.


Author(s):  
Kiyoaki Tanaka ◽  
Yuko Wasada-Tsutsui

The molecular orbitals (MOs) of diformohydrazide have been determined from the electron density measured by X-ray diffraction. The experimental and refinement procedures are explained in detail and the validity of the obtained MOs is assessed from the crystallographic point of view. The X-ray structure factors were measured at 100 K by a four-circle diffractometer avoiding multiple diffraction, the effect of which on the structure factors is comparable to two-centre structure factors. There remained no significant peaks on the residual density map and the R factors reduced significantly. Among the 788 MO coefficients, 731 converged, of which 694 were statistically significant. The C—H and N—H bond distances are 1.032 (2) and 1.033 (3) Å, respectively. The electron densities of theoretical and experimental MOs and the differences between them are illustrated. The overall features of the electron density obtained by X-ray molecular orbital (XMO) analysis are in good agreement with the canonical orbitals calculated by the restricted Hartree Fock (RHF) method. The bonding-electron distribution around the middle of each bond is well represented and the relative phase relationships of the π orbitals are reflected clearly in the electron densities on the plane perpendicular to the molecular plane. However, differences are noticeable around the O atom on the molecular plane. The orbital energies obtained by XMO analysis are about 0.3 a.u. higher than the corresponding canonical orbitals, except for MO10 to MO14 which are about 0.7 a.u. higher. These exceptions are attributed to the N—H...O′′ intermolecular hydrogen bond, which is neglected in the MO models of the present study. The hydrogen bond is supported by significant electron densities at the saddle points between the H(N) and O′′ atoms in MO7, 8, 14 and 17, and by that of O′′-p extended over H(N) in MO21 and 22, while no peaks were found in MO10, 11, 13 and 15. The electron density of each MO clearly exhibits its role in the molecule. Consequently, the MOs obtained by XMO analysis give a fundamental quantum mechanical insight into the real properties of molecules.


2021 ◽  
Vol 8 (9) ◽  
pp. 210565
Author(s):  
Yanchao Yin ◽  
Guoliang Zhang ◽  
Xianmang Xu ◽  
Peiyu Zhao ◽  
Liran Ma

Intermolecular hydrogen bonds are formed through the electrostatic attraction between the hydrogen nucleus on a strong polar bond and high electronegative atom with an unshared pair of electrons and a partial negative charge. It affects the physical and chemical properties of substances. Based on this, we presented a physical method to modulate intermolecular hydrogen bonds for not changing the physical–chemical properties of materials. The graphite and graphene are added into the glycerol, respectively, by being used as a viscosity reducer in this paper. The samples are characterized by Raman and 1H-nuclear magnetic resonance. Results show that intermolecular hydrogen bonds are adjusted by graphite or graphene. The rheology of glycerol is reduced to varying degrees. Transmission electron microscopes and computer simulation show that the spatial limiting action of graphite or graphene is the main cause of breaking the intermolecular hydrogen bond network structure. We hope this work reveals the potential interplay between nanomaterials and hydroxyl liquids, which will contribute to the field of solid–liquid coupling lubrication.


Molecules ◽  
2021 ◽  
Vol 26 (16) ◽  
pp. 5003
Author(s):  
Zhengyue Li ◽  
Xiuqiong Chen ◽  
Chaoling Bao ◽  
Chang Liu ◽  
Chunyang Liu ◽  
...  

It is common knowledge that pure alginate hydrogel is more likely to have weak mechanical strength, a lack of cell recognition sites, extensive swelling and uncontrolled degradation, and thus be unable to satisfy the demands of the ideal scaffold. To address these problems, we attempted to fabricate alginate/bacterial cellulose nanocrystals-chitosan-gelatin (Alg/BCNs-CS-GT) composite scaffolds using the combined method involving the incorporation of BCNs in the alginate matrix, internal gelation through the hydroxyapatite-d-glucono-δ-lactone (HAP-GDL) complex, and layer-by-layer (LBL) electrostatic assembly of polyelectrolytes. Meanwhile, the effect of various contents of BCNs on the scaffold morphology, porosity, mechanical properties, and swelling and degradation behavior was investigated. The experimental results showed that the fabricated Alg/BCNs-CS-GT composite scaffolds exhibited regular 3D morphologies and well-developed pore structures. With the increase in BCNs content, the pore size of Alg/BCNs-CS-GT composite scaffolds was gradually reduced from 200 μm to 70 μm. Furthermore, BCNs were fully embedded in the alginate matrix through the intermolecular hydrogen bond with alginate. Moreover, the addition of BCNs could effectively control the swelling and biodegradation of the Alg/BCNs-CS-GT composite scaffolds. Furthermore, the in vitro cytotoxicity studies indicated that the porous fiber network of BCNs could fully mimic the extracellular matrix structure, which promoted the adhesion and spreading of MG63 cells and MC3T3-E1 cells on the Alg/BCNs-CS-GT composite scaffolds. In addition, these cells could grow in the 3D-porous structure of composite scaffolds, which exhibited good proliferative viability. Based on the effect of BCNs on the cytocompatibility of composite scaffolds, the optimum BCNs content for the Alg/BCNs-CS-GT composite scaffolds was 0.2% (w/v). On the basis of good merits, such as regular 3D morphology, well-developed pore structure, controlled swelling and biodegradation behavior, and good cytocompatibility, the Alg/BCNs-CS-GT composite scaffolds may exhibit great potential as the ideal scaffold in the bone tissue engineering field.


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