scholarly journals Virtual Screening for Ligand Discovery at the σ1 Receptor

2020 ◽  
Vol 11 (8) ◽  
pp. 1555-1561
Author(s):  
Daniel A. Greenfield ◽  
Hayden R. Schmidt ◽  
Meredith A. Skiba ◽  
Michael D. Mandler ◽  
Jacob R. Anderson ◽  
...  
2019 ◽  
Author(s):  
Daniel A. Greenfield ◽  
Hayden R. Schmidt ◽  
Piotr Sliz ◽  
Andrew C. Kruse

AbstractThe σ1 receptor is a transmembrane protein implicated in several pathophysiological conditions, including neurodegenerative disease1, drug addiction2, cancer3, and pain4. However, there are no high-throughput functional assays for σ1 receptor drug discovery. Here, we assessed high-throughput structure-based computational docking for discovery of novel ligands of the σ1 receptor. We screened a library of over 6 million compounds using the Schrödinger Glide package, followed by experimental characterization of top-scoring candidates. 77% of tested candidates bound σ1 with high affinity (10-550 nM). These include compounds with high selectivity for the σ1 receptor compared to the genetically unrelated but pharmacologically similar σ2 receptor, as well as compounds with substantial cross-reactivity between the two receptors. These results establish structure-based virtual screening as a highly effective platform for σ1 receptor ligand discovery.


2011 ◽  
Vol 2 (11) ◽  
pp. 834-839 ◽  
Author(s):  
Erik Laurini ◽  
Valentina Dal Col ◽  
Maria Grazia Mamolo ◽  
Daniele Zampieri ◽  
Paola Posocco ◽  
...  

The Analyst ◽  
2019 ◽  
Vol 144 (9) ◽  
pp. 2881-2890 ◽  
Author(s):  
Zhihua Wang ◽  
Hao Liang ◽  
Haijie Cao ◽  
Bingjie Zhang ◽  
Jun Li ◽  
...  

An integrated approach was developed for discovery of natural herb-derived ligands targeting the hydrophobic pocket of nucleoprotein of Ebola viruses.


2008 ◽  
Vol 153 (S1) ◽  
pp. S55-S67 ◽  
Author(s):  
P Taylor ◽  
E Blackburn ◽  
Y G Sheng ◽  
S Harding ◽  
K-Y Hsin ◽  
...  

2015 ◽  
Vol 11 (10) ◽  
pp. e1004477 ◽  
Author(s):  
Claire Colas ◽  
Christof Grewer ◽  
Nicholas James Otte ◽  
Armanda Gameiro ◽  
Thomas Albers ◽  
...  

2015 ◽  
Vol 108 (2) ◽  
pp. 54a ◽  
Author(s):  
Claire Colas ◽  
Christoph Grewer ◽  
Armanda Gameiro ◽  
Thomas Albers ◽  
Kurnvir Singh ◽  
...  

2020 ◽  
Author(s):  
Eleonora Diamanti ◽  
Inda Setyawati ◽  
Spyridon Bousis ◽  
leticia mojas ◽  
lotteke Swier ◽  
...  

Here, we report on the virtual screening, design, synthesis and structure–activity relationships (SARs) of the first class of selective, antibacterial agents against the energy-coupling factor (ECF) transporters. The ECF transporters are a family of transmembrane proteins involved in the uptake of vitamins in a wide range of bacteria. Inhibition of the activity of these proteins could reduce the viability of pathogens that depend on vitamin uptake. Because of their central role in the metabolism of bacteria and their absence in humans, ECF transporters are novel potential antimicrobial targets to tackle infection. The hit compound’s metabolic and plasma stability, the potency (20, MIC Streptococcus pneumoniae = 2 µg/mL), the absence of cytotoxicity and a lack of resistance development under the conditions tested here suggest that this scaffold may represent a promising starting point for the development of novel antimicrobial agents with an unprecedented mechanism of action.<br>


2020 ◽  
Author(s):  
Mohammad Seyedhamzeh ◽  
Bahareh Farasati Far ◽  
Mehdi Shafiee Ardestani ◽  
Shahrzad Javanshir ◽  
Fatemeh Aliabadi ◽  
...  

Studies of coronavirus disease 2019 (COVID-19) as a current global health problem shown the initial plasma levels of most pro-inflammatory cytokines increased during the infection, which leads to patient countless complications. Previous studies also demonstrated that the metronidazole (MTZ) administration reduced related cytokines and improved treatment in patients. However, the effect of this drug on cytokines has not been determined. In the present study, the interaction of MTZ with cytokines was investigated using molecular docking as one of the principal methods in drug discovery and design. According to the obtained results, the IL12-metronidazole complex is more stable than other cytokines, and an increase in the surface and volume leads to prevent to bind to receptors. Moreover, ligand-based virtual screening of several libraries showed metronidazole phosphate, metronidazole benzoate, 1-[1-(2-Hydroxyethyl)-5- nitroimidazol-2-yl]-N-methylmethanimine oxide, acyclovir, and tetrahydrobiopterin (THB or BH4) like MTZ by changing the surface and volume prevents binding IL-12 to the receptor. Finally, the inhibition of the active sites of IL-12 occurred by modifying the position of the methyl and hydroxyl functional groups in MTZ. <br>


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