scholarly journals Long-Range RNA Structural Information via a Paramagnetically Tagged Reporter Protein

2019 ◽  
Vol 141 (4) ◽  
pp. 1430-1434 ◽  
Author(s):  
Madeleine Strickland ◽  
Jonathan Catazaro ◽  
Rohith Rajasekaran ◽  
Marie-Paule Strub ◽  
Colin O’Hern ◽  
...  
2020 ◽  
Author(s):  
Nan Wu ◽  
Naohiro Kobayashi ◽  
Kengo Tsuda ◽  
Satoru Unzai ◽  
Tomonori Saotome ◽  
...  

AbstractGaussia luciferase (GLuc) is the smallest luciferase (18.2kDa; 168 residues) reported so far and is thus attracting much attention as a reporter protein, but the lack of structural information is hampering further application. Here, we report the first solution structure of a fully active, recombinant GLuc determined by heteronuclear multidimensional NMR. We obtained a natively folded GLuc by bacterial expression and efficient refolding using a solubility tag. Almost perfect assignments of GLuc’s 1H, 13C and 15N backbone signals were obtained. GLuc structure was determined using CYANA, which automatically identified over 2500 NOEs of which > 570 were long-range. GLuc is an all-alpha-helix protein made of nine helices. The region spanning residues 10–18, 36-81, 96-145 and containing eight out of the nine helices was determined with a Cα-atom RMSD of 1.39 ű 0.39 Å. The structure of GLuc is novel and unique. Two homologous sequential repeats form two anti-parallel bundles made by 4 helices and tied together by three disulfide bonds. The N-terminal helix 1 is grabbed by these 4 helices. Further, we found a hydrophobic cavity where several residues responsible for bioluminescence were identified in previous mutational studies, and we thus hypothesize that this is a catalytic cavity, where the hydrophobic coelenterazine binds and the bioluminescence reaction takes place.


1997 ◽  
Vol 101 (5) ◽  
pp. 968-968 ◽  
Author(s):  
M. F. Mesleh ◽  
J. M. Hunter ◽  
A. A. Shvartsburg ◽  
G. C. Schatz ◽  
M. F. Jarrold

1999 ◽  
Vol 121 (33) ◽  
pp. 7700-7701 ◽  
Author(s):  
Jérôme Boisbouvier ◽  
Pierre Gans ◽  
Martin Blackledge ◽  
Bernhard Brutscher ◽  
Dominique Marion

2008 ◽  
Vol 52 (1) ◽  
pp. 193-194 ◽  
Author(s):  
T. Ohyama ◽  
A. Furukawa ◽  
T. Mashima ◽  
T. Sugiyama ◽  
S. Ohgara ◽  
...  

2016 ◽  
Vol 113 (20) ◽  
pp. E2794-E2801 ◽  
Author(s):  
Ashok Sekhar ◽  
Rina Rosenzweig ◽  
Guillaume Bouvignies ◽  
Lewis E. Kay

The 70-kDa heat shock protein (Hsp70) family of chaperones bind cognate substrates to perform a variety of different processes that are integral to cellular homeostasis. Although detailed structural information is available on the chaperone, the structural features of folding competent substrates in the bound form have not been well characterized. Here we use paramagnetic relaxation enhancement (PRE) NMR spectroscopy to probe the existence of long-range interactions in one such folding competent substrate, human telomere repeat binding factor (hTRF1), which is bound to DnaK in a globally unfolded conformation. We show that DnaK binding modifies the energy landscape of the substrate by removing long-range interactions that are otherwise present in the unbound, unfolded conformation of hTRF1. Because the unfolded state of hTRF1 is only marginally populated and transiently formed, it is inaccessible to standard NMR approaches. We therefore developed a 1H-based CEST experiment that allows measurement of PREs in sparse states, reporting on transiently sampled conformations. Our results suggest that DnaK binding can significantly bias the folding pathway of client substrates such that secondary structure forms first, followed by the development of longer-range contacts between more distal parts of the protein.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Nan Wu ◽  
Naohiro Kobayashi ◽  
Kengo Tsuda ◽  
Satoru Unzai ◽  
Tomonori Saotome ◽  
...  

AbstractGaussia luciferase (GLuc) is a small luciferase (18.2 kDa; 168 residues) and is thus attracting much attention as a reporter protein, but the lack of structural information is hampering further application. Here, we report the first solution structure of a fully active, recombinant GLuc determined by heteronuclear multidimensional NMR. We obtained a natively folded GLuc by bacterial expression and efficient refolding using a Solubility Enhancement Petide (SEP) tag. Almost perfect assignments of GLuc’s 1H, 13C and 15N backbone signals were obtained. GLuc structure was determined using CYANA, which automatically identified over 2500 NOEs of which > 570 were long-range. GLuc is an all-alpha-helix protein made of nine helices. The region spanning residues 10–18, 36–81, 96–145 and containing eight out of the nine helices was determined with a Cα-atom RMSD of 1.39 Å ± 0.39 Å. The structure of GLuc is novel and unique. Two homologous sequential repeats form two anti-parallel bundles made by 4 helices and tied together by three disulfide bonds. The N-terminal helix 1 is grabbed by these 4 helices. Further, we found a hydrophobic cavity where several residues responsible for bioluminescence were identified in previous mutational studies, and we thus hypothesize that this is a catalytic cavity, where the hydrophobic coelenterazine binds and the bioluminescence reaction takes place.


Nature ◽  
1969 ◽  
Vol 224 (5216) ◽  
pp. 261-262 ◽  
Author(s):  
G. I. DISTLER ◽  
V. G. OBRONOV

1996 ◽  
Vol 100 (40) ◽  
pp. 16082-16086 ◽  
Author(s):  
M. F. Mesleh ◽  
J. M. Hunter ◽  
A. A. Shvartsburg ◽  
G. C. Schatz ◽  
M. F. Jarrold

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