scholarly journals Transfer of molecular recognition information from DNA nanostructures to gold nanoparticles

2016 ◽  
Vol 8 (2) ◽  
pp. 162-170 ◽  
Author(s):  
Thomas G. W. Edwardson ◽  
Kai Lin Lau ◽  
Danny Bousmail ◽  
Christopher J. Serpell ◽  
Hanadi F. Sleiman
2008 ◽  
Vol 29 (2) ◽  
pp. 149-154 ◽  
Author(s):  
Chunhua Luo ◽  
Fang Zuo ◽  
Zhaohui Zheng ◽  
Xu Cheng ◽  
Xiaobin Ding ◽  
...  

2019 ◽  
Author(s):  
Jie Deng ◽  
Andreas Walther

We introduce pathway complexity on a multicomponent systems level in chemically fueled transient DNA polymerization system. The systems are based on a monomeric species pool that is fueled by ATP and orchestrated by an enzymatic reaction network (ERN) of ATP-powered ligation and concurrent cleavage. Such systems display autonomous evolution over multiple structural dynamic steady states from monomers to dimers, oligomer of dimers to ultimately randomized polymer structure before being ultimately degraded back to monomers once the fuel is consumed. The enabling key principle is to design monomer species having kinetically selected molecular recognition with respect to the structure-forming step (ATP-powered ligation) by encoding different sticky-end overhangs into the ligation area. However, all formed structures are equally degraded, and the orthogonal molecular recognition of the different starting species are harmonized during the constantly occurring restriction process, leading in consequence to a reconfiguration of the driven dynamic nanostructures on a higher hierarchical level. This non-equilibrium systems chemistry approach to pathway complexity provides new conceptual insights in fuel-driven automatons and autonomous materials design.


NANO ◽  
2020 ◽  
Vol 15 (08) ◽  
pp. 2050110
Author(s):  
Zhikun Zhang ◽  
Xiaojie Ye ◽  
Qingqing Liu ◽  
Cuixia Hu ◽  
Jimmy Yun ◽  
...  

Nucleic acid detection is becoming increasingly important in the diagnostics of genetic diseases for biological analysis. We herein propose gold nanoparticles as probe for colorimetric detection of nucleic acids with branched DNA nanostructures, which enables a novel and simple colorimetric biosensor. In our system, the target DNA specifically triggered two short-chain ssDNA probes to generate branched DNA nanostructures (Y-shape DNA), which prevent AuNPs from aggregation in aqueous NaCl solution. On the contrary, when the target DNA did not exist, gold nanoparticles were unstable and aggregated easily because there is no anti-aggregation function from Y-shape DNA. Sensor response was found to be proportional to the target DNA concentration from 5 to 100[Formula: see text]nM, with detection limits determined as 5[Formula: see text]nM. The developed platform is for colorimetric nucleic acid detection without enzymes, label and modification holds great promise for practical applications.


2005 ◽  
Vol 44 (19) ◽  
pp. 2913-2916 ◽  
Author(s):  
T. Robert Tshikhudo ◽  
Domenico Demuru ◽  
Zhenxin Wang ◽  
Mathias Brust ◽  
Andrea Secchi ◽  
...  

2013 ◽  
Vol 49 (69) ◽  
pp. 7617 ◽  
Author(s):  
Boram Kim ◽  
Sung-ju Choi ◽  
So-hee Han ◽  
Kang-Yell Choi ◽  
Yong-beom Lim

2019 ◽  
Author(s):  
Jie Deng ◽  
Andreas Walther

We introduce pathway complexity on a multicomponent systems level in chemically fueled transient DNA polymerization system. The systems are based on a monomeric species pool that is fueled by ATP and orchestrated by an enzymatic reaction network (ERN) of ATP-powered ligation and concurrent cleavage. Such systems display autonomous evolution over multiple structural dynamic steady states from monomers to dimers, oligomer of dimers to ultimately randomized polymer structure before being ultimately degraded back to monomers once the fuel is consumed. The enabling key principle is to design monomer species having kinetically selected molecular recognition with respect to the structure-forming step (ATP-powered ligation) by encoding different sticky-end overhangs into the ligation area. However, all formed structures are equally degraded, and the orthogonal molecular recognition of the different starting species are harmonized during the constantly occurring restriction process, leading in consequence to a reconfiguration of the driven dynamic nanostructures on a higher hierarchical level. This non-equilibrium systems chemistry approach to pathway complexity provides new conceptual insights in fuel-driven automatons and autonomous materials design.


2015 ◽  
Vol 27 (11-12) ◽  
pp. 772-779 ◽  
Author(s):  
Tanuja Yeluri ◽  
Rajesh S. Bhosale ◽  
Namdev V. Ghule ◽  
Aaron M. Raynor ◽  
Sidhanath V. Bhosale ◽  
...  

2018 ◽  
Vol 273 ◽  
pp. 559-565 ◽  
Author(s):  
Ziwei Hu ◽  
Jingyi Jian ◽  
Yuanqi Hua ◽  
Danting Yang ◽  
Yaohui Gao ◽  
...  

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