Detection of minor drug-resistant populations by parallel allele-specific sequencing

2007 ◽  
Vol 4 (2) ◽  
pp. 123-125 ◽  
Author(s):  
Fangping Cai ◽  
Haifeng Chen ◽  
Charles B Hicks ◽  
John A Bartlett ◽  
Jun Zhu ◽  
...  
Keyword(s):  
Drug Resistant ◽  
Allele Specific ◽  
Allele Specific Sequencing

scholarly journals Erratum: Corrigendum: Detection of minor drug-resistant populations by parallel allele-specific sequencing

2007 ◽  
Vol 4 (2) ◽  
pp. 187-187
Author(s):  
Fangping Cai ◽  
Haifeng Chen ◽  
Charles B Hicks ◽  
John A Bartlett ◽  
Jun Zhu ◽  
...  
Keyword(s):  
Drug Resistant ◽  
Allele Specific ◽  
Allele Specific Sequencing

scholarly journals Comparison of 454 Ultra-Deep Sequencing and Allele-Specific Real-Time PCR with Regard to the Detection of Emerging Drug-Resistant Minor HIV-1 Variants after Antiretroviral Prophylaxis for Vertical Transmission

PLoS ONE ◽  
2015 ◽  
Vol 10 (10) ◽  
pp. e0140809 ◽  
Author(s):  
Andrea Hauser ◽  
Claudia Kuecherer ◽  
Andrea Kunz ◽  
Piotr Wojtek Dabrowski ◽  
Aleksandar Radonić ◽  
...  
Keyword(s):  
Real Time ◽  
Vertical Transmission ◽  
Deep Sequencing ◽  
Real Time Pcr ◽  
Drug Resistant ◽  
Antiretroviral Prophylaxis ◽  
Allele Specific ◽  
Hiv 1

scholarly journals Ultrasensitive Detection of Minor Drug-Resistant Variants for HIV After Nevirapine Exposure Using Allele-Specific PCR: Clinical Significance

2010 ◽  
Vol 26 (3) ◽  
pp. 293-300 ◽  
Author(s):  
Christopher F. Rowley ◽  
Christian L. Boutwell ◽  
Esther J. Lee ◽  
Iain J. MacLeod ◽  
Heather J. Ribaudo ◽  
...  
Keyword(s):  
Clinical Significance ◽  
Ultrasensitive Detection ◽  
Drug Resistant ◽  
Specific Pcr ◽  
Allele Specific ◽  
Allele Specific Pcr

NovelNAT2haplotyping using allele-specific sequencing

2014 ◽  
Vol 15 (8) ◽  
pp. 1117-1124 ◽  
Author(s):  
Seong-Ho Kang ◽  
Geon Park ◽  
Sook Jin Jang ◽  
Dae-Soo Moon
Keyword(s):  
Allele Specific ◽  
Allele Specific Sequencing

scholarly journals WASP: allele-specific software for robust discovery of molecular quantitative trait loci

2014 ◽  
Author(s):  
Bryce van de Geijn ◽  
Graham McVicker ◽  
Yoav Gilad ◽  
Jonathan Pritchard
Keyword(s):  
Quantitative Trait Loci ◽  
Qtl Mapping ◽  
Error Rate ◽  
Quantitative Trait ◽  
Rna Seq ◽  
Read Mapping ◽  
Trait Loci ◽  
Allele Specific ◽  
Allele Specific Sequencing

Allele-specific sequencing reads provide a powerful signal for identifying molecular quantitative trait loci (QTLs), however they are challenging to analyze and prone to technical artefacts. Here we describe WASP, a suite of tools for unbiased allele-specific read mapping and discovery of molecular QTLs. Using simulated reads, RNA-seq reads and ChIP-seq reads, we demonstrate that our approach has a low error rate and is far more powerful than existing QTL mapping approaches.

scholarly journals P20-03. Identification of low frequency genetic variants during acute and early infection by parallel-allele specific sequencing

Retrovirology ◽  
2009 ◽  
Vol 6 (S3) ◽  
Author(s):  
JW Pavlicek ◽  
S Chen ◽  
J Hopper ◽  
J Kirchherr ◽  
F Gao
Keyword(s):  
Genetic Variants ◽  
Low Frequency ◽  
Early Infection ◽  
Allele Specific ◽  
Allele Specific Sequencing

scholarly journals Minority Drug-Resistant HIV-1 Variants in Treatment Naïve East-African and Caucasian Patients Detected by Allele-Specific Real-Time PCR

PLoS ONE ◽  
2014 ◽  
Vol 9 (10) ◽  
pp. e111042 ◽  
Author(s):  
Halime Ekici ◽  
Wondwossen Amogne ◽  
Getachew Aderaye ◽  
Lars Lindquist ◽  
Anders Sönnerborg ◽  
...  
Keyword(s):  
Real Time ◽  
Real Time Pcr ◽  
Drug Resistant ◽  
East African ◽  
Treatment Naïve ◽  
Allele Specific ◽  
Caucasian Patients ◽  
Hiv 1

The accuracy of heterozygous base calling from diploid sequence and resolution of haplotypes using allele-specific sequencing

1999 ◽  
Vol 8 (10) ◽  
pp. 1750-1752 ◽  
Author(s):  
Matthew P. Hare ◽  
Stephen R. Palumbi
Keyword(s):  
Base Calling ◽  
Allele Specific ◽  
Allele Specific Sequencing

Use of allele‐specific sequencing primers is an efficient alternative to PCR subcloning of low‐copy nuclear genes

2011 ◽  
Vol 12 (1) ◽  
pp. 128-135 ◽  
Author(s):  
ANNE‐CATHRINE SCHEEN ◽  
BERNARD E. PFEIL ◽  
ANNA PETRI ◽  
NAHID HEIDARI ◽  
STEPHAN NYLINDER ◽  
...  
Keyword(s):  
Nuclear Genes ◽  
Allele Specific ◽  
Efficient Alternative ◽  
Allele Specific Sequencing
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