scholarly journals Reverse-Correlation Analysis of the Mechanosensation Circuit and Behavior in C. elegans Reveals Temporal and Spatial Encoding

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Daniel A. Porto ◽  
John Giblin ◽  
Yiran Zhao ◽  
Hang Lu
2017 ◽  
Author(s):  
Daniel A. Porto ◽  
John Giblin ◽  
Yiran Zhao ◽  
Hang Lu

AbstractAnimals must integrate the activity of multiple mechanoreceptors to navigate complex environments. In Caenorhabditis elegans, the general roles of the mechanosensory neurons have been defined, but most studies involve end-point or single-time-point measurements, and thus lack dynamical information. Here, we formulate a set of unbiased quantitative characterizations of the mechanosensory system by using reverse correlation analysis on behavior. We use a custom tracking, selective illumination, and optogenetics platform to compare two mechanosensory systems: the gentle-touch (TRNs) and harsh-touch (PVD) circuits. This method yields characteristic linear filters that allow for prediction of behavioral responses. The resulting filters are consistent with previous findings, and further provide new insights on the dynamics and spatial encoding of the systems. Our results suggest that the tiled network of the gentle-touch neurons has better resolution for spatial encoding than the harsh-touch neurons. Additionally, linear-nonlinear models accurately predict behavioral responses based only on sensory neuron activity. Our results capture the overall dynamics of behavior induced by the activation of sensory neurons, providing simple transformations that quantitatively characterize these systems. Furthermore, this platform can be extended to capture the behavioral dynamics induced by any neuron or other excitable cells in the animal.Author SummaryAnimals constantly integrate the activity of neurons throughout their bodies to choose the most appropriate behavior. A key goal in quantitative neuroscience is to characterize and predict how neuronal circuits control and modulate behavior. C. elegans, a nematode with a fully mapped connectome, is an ideal model organism for elucidating the links between neuronal circuits and behavior. However, many studies relating activity in neurons to behavior rely on spontaneous behavior and lack information about their dynamics. In this study, we formulate unbiased quantitative characterizations of sensory neurons in C. elegans using with reverse correlation analysis with a white noise stimulus. We use optogenetics to stimulate body touch sensory neurons in freely moving worms, and provide quantitative descriptions that capture the dynamic transformations between sensory neuron activity and behavioral outputs. Our results are consistent with previous findings, and additionally provide new insights on the spatial encoding of these systems. Our system provides a simple platform for characterizing the behavioral output due to specific neurons, and can be extended to any excitable cell in the animal.


1994 ◽  
Vol 71 (1) ◽  
pp. 330-346 ◽  
Author(s):  
G. M. Ghose ◽  
I. Ohzawa ◽  
R. D. Freeman

1. To investigate the functional significance of temporally correlated discharge between nearby cells in the visual cortex, we obtained receptive-field maps of correlated discharge for 68 cell pairs in kittens and cats. Discharge from cell pairs was measured by a single extracellular electrode. A reverse correlation procedure was used to relate neural discharge to particular stimuli within a random sequence of briefly flashed bright and dark bars. Bicellular receptive fields (BRFs) were mapped by applying reverse correlation to approximately synchronous discharge from two cells. Unicellular receptive fields (URFs) were simultaneously mapped by separately applying reverse correlation to the discharge of each cell. 2. The receptive fields of the two neurons within each pair were initially studied by varying the orientation and spatial frequency of drifting sinusoidal gratings. After these tests a random sequence of appropriately oriented bars was used to evoke discharge suitable for reverse correlation analysis. For most cell pairs, the temporal pattern or strength of correlated discharge produced by such stimulation is different from that observed with stimulation by sinusoidal gratings. This indicates that visually evoked correlated discharge between nearby cells is stimulus dependent. 3. BRFs were classified according to their pattern of spatial sensitivity into three groups that roughly correspond to the single-cell receptive-field types of the lateral geniculate nucleus (LGN; center-surround) and visual cortex (simple and complex). These classifications were compared with the receptive-field types of the single cells within each pair. LGN-type and simple-type BRFs were only seen for pairs in which at least one of the cells was simple. Conversely, complex-type BRFs were only seen for pairs in which at least one of the cells was complex. 4. Because the reverse correlation procedure can be used to characterize the spatiotemporal receptive-field structure of simple cells, we were able to compare both the spatial and temporal properties associated with the URFs and BRFs of simple cell pairs. The spatiotemporal structure of the BRF of a simple-cell pair can largely be predicted on the basis of the two URFs. Although this prediction suggests the possibility that BRFs are stimulus artifacts, a shuffle procedure, in which multiple repetitions of random sequences were presented, verifies the neural origin of BRFs. BRFs emerge from specific neural pathways and are not simply a consequence of unicellular response preferences. 5. Five measures were derived from the reverse correlation analysis of simple-cell receptive fields: width, duration, optimal spatial and temporal frequency, and optimal velocity.(ABSTRACT TRUNCATED AT 400 WORDS)


2020 ◽  
Vol 20 (11) ◽  
pp. 934
Author(s):  
Hironori Maruyama ◽  
Hiromi Sato ◽  
Ryuto Yashiro ◽  
Isamu Motoyoshi

2015 ◽  
Author(s):  
Luis Hernandez-Nunez ◽  
Jonas Belina ◽  
Mason Klein ◽  
Guangwei Si ◽  
Lindsey Claus ◽  
...  

Neural circuits for behavior transform sensory inputs into motor outputs in patterns with strategic value. Determining how neurons along a sensorimotor circuit contribute to this transformation is central to understanding behavior. To do this, a quantitative framework to describe behavioral dynamics is needed. Here, we built a high-throughput optogenetic system for Drosophila larva to quantify the sensorimotor transformations underlying navigational behavior. We express CsChrimson, a red-shifted variant of Channelrhodopsin, in specific chemosensory neurons, and expose large numbers of freely moving animals to random optogenetic activation patterns. We quantify their behavioral responses and use reverse correlation analysis to uncover the linear and static nonlinear components of navigation dynamics as functions of optogenetic activation patterns of specific sensory neurons. We find that linear-nonlinear (LN) models accurately predict navigational decision-making for different optogenetic activation waveforms. We use our method to establish the valence and dynamics of navigation driven by optogenetic activation of different combinations of bitter sensing gustatory neurons. Our method captures the dynamics of optogenetically-induced behavior in compact, quantitative transformations that can be used to characterize circuits for sensorimotor processing and their contribution to navigational decision-making.


2018 ◽  
Vol 55 (6) ◽  
pp. e13058 ◽  
Author(s):  
Nina N. Thigpen ◽  
L. Forest Gruss ◽  
Steven Garcia ◽  
David R. Herring ◽  
Andreas Keil

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